View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14672_low_6 (Length: 391)

Name: NF14672_low_6
Description: NF14672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14672_low_6
NF14672_low_6
[»] chr8 (1 HSPs)
chr8 (89-385)||(39669947-39670229)


Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 89 - 385
Target Start/End: Complemental strand, 39670229 - 39669947
Alignment:
Q  89 gtgggtaagtgagtgtatataatatgtgtcttgactgagtctgtatttttctgtttcatttgttcgagtggtccacgtcaactcaaataagagtagtaaa 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39670229 gtgggtaagtgagtgtatataatatgtgtcttgactgagtctgtatttttctgtttcatttgttcgagtggtccacgtcaactcaaataagagtagtaaa 39670130  T
Q  189 tgccgctgcatgctgtgtcttttgtacagttgttggtgttgttgtaaatacttatgaatgaatgatagtgttatgatgaataataatactcctactaggc 288  Q
    |||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  39670129 tgccgctgcatgctgtgtcttttgtacagtt------gttgttgtaaatacttatgaatgaatgatagtgttatgatgaataataatactcctact---- 39670040  T
Q  289 taccactacttggttttggtctttgttgtgttcctcgttactcgggctgttcctcatcctacgctcccgctgactccgacatgtctgtgctgctcct 385  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  39670039 ----actacttggttttggtctttgttgtgttcctcgttactcgggctgttcctcatcctacgctcccgctgactccgacatgtccgttctgctcct 39669947  T

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