View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14672_low_7 (Length: 384)
Name: NF14672_low_7
Description: NF14672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14672_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 381
Target Start/End: Original strand, 49870838 - 49871201
Alignment:
| Q |
18 |
agtttctccatggtcttcccaaataagctatcttgggttgcatggtaagtacttcgggttccccggtgaaatggcagttttggaaaacaagggcggatac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49870838 |
agtttctccatggtcttcccaaataagctatcttgggttgcatggtaagaacttcgggttccccggtgaaatggcagttttggaaaacaagggcggatac |
49870937 |
T |
|
| Q |
118 |
actgtcaactttggttcttcctcctgctgtcaccatgcattgttgagttgccattggttttctaacgacgagcttgcagttttggaaaactccaactgca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
49870938 |
actgtcaactttggttcttcctcctgctgtcaccatgcattgttgagttgccattggttttctaacgatgagtttgcagttttggaaaactccaactgca |
49871037 |
T |
|
| Q |
218 |
tcaccaaagacaaagtcgattgttccggtaatggtgcagtcgcggtagaattgtcttttggattgtgtgtagagtgtatcttggtaaccgttcatttcgc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
49871038 |
tcaccaaagacaaagtcgattgttccggtaatggtgcagtcgcggtagaattgtcttttggattgtgtgtagagtgtatcttggtaaccgttcatttcac |
49871137 |
T |
|
| Q |
318 |
agttgtagaacaatgctttgtctgctgttacacggagggccactgcttgatgctttgcggcacc |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49871138 |
agttgtagaacaatgctttgtctgctgttacacggagggccactgcttgatgctttgcggcacc |
49871201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 20 - 381
Target Start/End: Original strand, 49864903 - 49865264
Alignment:
| Q |
20 |
tttctccatggtcttcccaaataagctatcttgggttgcatggtaagtacttcgggttccccggtgaaatggcagttttggaaaacaagggcggatacac |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
49864903 |
tttctccatggtcttcccaaataagctatcttgggttgcatggtaagaacttcgggttccccggtgaaatgacagttttggaaaacaagggcggatacac |
49865002 |
T |
|
| Q |
120 |
tgtcaactttggttcttcctcctgctgtcaccatgcattgttgagttgccattggttttctaacgacgagcttgcagttttggaaaactccaactgcatc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
49865003 |
tgtcaactttggttcttcctcctgctgtcaccatgcattgttgatttgccattggttttctaacgacgagcttgcagttttggaaaactccaacagcatc |
49865102 |
T |
|
| Q |
220 |
accaaagacaaagtcgattgttccggtaatggtgcagtcgcggtagaattgtcttttggattgtgtgtagagtgtatcttggtaaccgttcatttcgcag |
319 |
Q |
| |
|
||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
49865103 |
accaaagacaaagtcaattgttccgctaatagtgcagtcgcggtagaattgtcttttggattgtgtgtagagtgtatcttggtaaccgtccatttgacag |
49865202 |
T |
|
| Q |
320 |
ttgtagaacaatgctttgtctgctgttacacggagggccactgcttgatgctttgcggcacc |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
49865203 |
ttgtagaacaatgctttgtctgctgttacacggagggccactgcttggtgctttgcggcacc |
49865264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 191 - 368
Target Start/End: Complemental strand, 13967668 - 13967491
Alignment:
| Q |
191 |
ttgcagttttggaaaactccaactgcatcaccaaagacaaagtcgattgttccggtaatggtgcagtcgcggtagaattgtcttttggattgtgtgtaga |
290 |
Q |
| |
|
||||| |||||||||||||||| || || ||||| |||||||||||||| || | |||| |||||| ||||||||||| | || |||||| ||||| |
|
|
| T |
13967668 |
ttgcaattttggaaaactccaaaggcgtcgccaaaaacaaagtcgattgtgccagagatggcgcagtcacggtagaattgacgttgggattggacgtaga |
13967569 |
T |
|
| Q |
291 |
gtgtatcttggtaaccgttcatttcgcagttgtagaacaatgctttgtctgctgttacacggagggccactgcttgat |
368 |
Q |
| |
|
|||| |||||| |||||| ||||| ||||||| ||| | ||||| ||||||||||| |||||||| |||||||||| |
|
|
| T |
13967568 |
gtgtgtcttggaaaccgtccatttgacagttgtggaatattgcttgatctgctgttactcggagggcaactgcttgat |
13967491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 172 - 369
Target Start/End: Complemental strand, 13960523 - 13960326
Alignment:
| Q |
172 |
tggttttctaacgacgagcttgcagttttggaaaactccaactgcatcaccaaagacaaagtcgattgttccggtaatggtgcagtcgcggtagaattgt |
271 |
Q |
| |
|
||||||||| |||| || |||||||||||||||||| ||| || ||||| ||| | ||||||||| || | ||| ||||||| ||||||||||| |
|
|
| T |
13960523 |
tggttttcttacgattagtttgcagttttggaaaactgcaaaggcgtcaccgtagatcatgtcgattgtgccagagatgctgcagtcacggtagaattga |
13960424 |
T |
|
| Q |
272 |
cttttggattgtgtgtagagtgtatcttggtaaccgttcatttcgcagttgtagaacaatgctttgtctgctgttacacggagggccactgcttgatg |
369 |
Q |
| |
|
| || ||||| | | ||||||| |||||||||| | |||| |||||||||||| | |||||||||||||||||| ||||| || ||||||||||| |
|
|
| T |
13960423 |
cgttgggattcggcgaagagtgttgcttggtaaccatctatttggcagttgtagaagattgctttgtctgctgttactcggagtgcaactgcttgatg |
13960326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 19394572 - 19394624
Alignment:
| Q |
254 |
cagtcgcggtagaattgtcttttggattgtgtgtagagtgtatcttggtaacc |
306 |
Q |
| |
|
|||||||||||||||||||| | || ||||| ||| ||||| ||||||||||| |
|
|
| T |
19394572 |
cagtcgcggtagaattgtctgtgggtttgtgcgtatagtgtgtcttggtaacc |
19394624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 270
Target Start/End: Complemental strand, 37150693 - 37150614
Alignment:
| Q |
191 |
ttgcagttttggaaaactccaactgcatcaccaaagacaaagtcgattgttccggtaatggtgcagtcgcggtagaattg |
270 |
Q |
| |
|
|||||||||||||| ||| |||||| ||||||||||||||||| || || | |||||||||||| ||||||||||| |
|
|
| T |
37150693 |
ttgcagttttggaatactgattctgcattgccaaagacaaagtcgatggtacctgaaatggtgcagtcacggtagaattg |
37150614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 270
Target Start/End: Complemental strand, 37159518 - 37159439
Alignment:
| Q |
191 |
ttgcagttttggaaaactccaactgcatcaccaaagacaaagtcgattgttccggtaatggtgcagtcgcggtagaattg |
270 |
Q |
| |
|
|||||||||||||| ||| |||||| ||||||||||||||||| || || | |||||||||||| ||||||||||| |
|
|
| T |
37159518 |
ttgcagttttggaatactgattctgcattgccaaagacaaagtcgatggtacctgaaatggtgcagtcacggtagaattg |
37159439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University