View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14672_low_8 (Length: 283)
Name: NF14672_low_8
Description: NF14672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14672_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 5979508 - 5979244
Alignment:
| Q |
1 |
tacaaaaaattaaagacatttacaatgaatcaaaacttgcagtaatcacaataagaattaaattcttgaggaaaaaactactttgtgactcttatgttca |
100 |
Q |
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| T |
5979508 |
tacaaaaaattaaagacatttacaatgaatcaaaacttgtagtaatcacaataagaattaaattcttgaggaaaaaactactttgtgactcttatgttca |
5979409 |
T |
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| Q |
101 |
agtgcttctctgcaaatcgtgcaagattaataaattctttatcatcaatgaaaccatcatggtttgaatcaacggacttcaagaccttattgctcttcca |
200 |
Q |
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| T |
5979408 |
agtgcttctctgcaaatcgtgcaagattaataaattctttatcatcaatgaaaccatcatggtttgaatcaacggacttcaagaccttattgctcttcca |
5979309 |
T |
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| Q |
201 |
tgaagcaaaaaggccactggtgattctcattgcctcacgcagttcacctttgctgatgcgaccgt |
265 |
Q |
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| T |
5979308 |
tgaagcaaaaaggccactggtgattctcattgcctcacgcagttcacctttgctgatgcgaccgt |
5979244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 82 - 265
Target Start/End: Complemental strand, 5983199 - 5983016
Alignment:
| Q |
82 |
tttgtgactcttatgttcaagtgcttctctgcaaatcgtgcaagattaataaattctttatcatcaatgaaaccatcatggtttgaatcaacggacttca |
181 |
Q |
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| T |
5983199 |
tttgtgattcttatgttcaagtgcttctctgcaaagtgcgcaaggttaatgaactctttatcatcaatgaaaccgtcgtggttggcatcgacagatttca |
5983100 |
T |
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| Q |
182 |
agaccttattgctcttccatgaagcaaaaaggccactggtgattctcattgcctcacgcagttcacctttgctgatgcgaccgt |
265 |
Q |
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| T |
5983099 |
agaccttgttactcttccacgaagcaaagaggccaccggtgattctcaacacctcgcgcagctcatctttgctgattcgaccgt |
5983016 |
T |
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