View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14673_high_3 (Length: 447)
Name: NF14673_high_3
Description: NF14673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14673_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 15 - 427
Target Start/End: Complemental strand, 53228996 - 53228583
Alignment:
| Q |
15 |
ataaacttgttcaaaaattcaaagaataaaatggaatgnnnnnnnnn-ggagggaatagaagggatagtagctaaaaaattgtgtcttttcttgtctctt |
113 |
Q |
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| T |
53228996 |
ataaacttgttcaaaaattcaaagaataaaatggaatgaaaaaaaaaaggagggaatagaagggatagtagctaaaaaat-gtgtcttttcttgtctctt |
53228898 |
T |
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| Q |
114 |
atcaaaccctcataggacgatgaaggatgatgattgtcctttgtacctttcggtgcttattatccttcccatccatgcatgctctcatcatctttgacca |
213 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53228897 |
atcaaaccctcataggacaatgaaggatgatgattgtcctttgtacctttcggtgcttattatccttcccatccatgcatgctctcatcatctttgacca |
53228798 |
T |
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| Q |
214 |
ttgtttgactatcgaatccttta-gttttaatttaatcgctccattgttannnnnnnaatcgaaagcaaagaagttggaccactgattcaaactaataaa |
312 |
Q |
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| T |
53228797 |
ttttttgactatcgaatcctttaggttttaatttaatcgctccattgttatttttttaatcaaaagcaaagaagttgcaccactaattcaaactaataaa |
53228698 |
T |
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| Q |
313 |
ccacaaattagaaatgacagggtcacattcactaacatactattttaatatatccaataataataagtcatgttatccattttttaattcattttatcta |
412 |
Q |
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||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53228697 |
ccacaaattagaaatcacagggtcacattcgctaacacactattttaatatatccaataataataagtcatgttatccattttttaattcattttatcta |
53228598 |
T |
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| Q |
413 |
taatcggtttcatct |
427 |
Q |
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|||||| |||||||| |
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| T |
53228597 |
taatcgatttcatct |
53228583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 408
Target Start/End: Complemental strand, 27749080 - 27749002
Alignment:
| Q |
331 |
agggtcacattcactaacatactattttaatatatccaataataataagtcatgttatcca-ttttttaattcatttta |
408 |
Q |
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||||||||||||||||||| || |||||| | ||||||| ||||| | ||||| ||||| ||||||||||||||||| |
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| T |
27749080 |
agggtcacattcactaacactctcttttaaaacatccaatcataattaaccatgtcatccacttttttaattcatttta |
27749002 |
T |
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