View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14673_high_5 (Length: 396)
Name: NF14673_high_5
Description: NF14673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14673_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 15 - 377
Target Start/End: Complemental strand, 5548670 - 5548308
Alignment:
| Q |
15 |
cataggtgaataggtgaaatattaatatgataagccagttcagtgattcttattggttgatcacttatttcactgactttaattttaaaagaatttatta |
114 |
Q |
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| T |
5548670 |
cataggtgaataggtgaaatattaatatgataagccagttcagtgattcttattggttgatcacttatttcactgactttaattttaaaagaatttatta |
5548571 |
T |
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| Q |
115 |
tactctatgaatgaattggaagaaattgtttttctatagaagggtgtatttgtactatagaagataaatgttagggctcaaatggaagagggaaaaagag |
214 |
Q |
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| T |
5548570 |
tactctatgaatgaattggaagaaattgtttttctatagaagggtgtatttgtactatagaagataaatgttagggctcaaatggaagagggaaaaagag |
5548471 |
T |
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| Q |
215 |
aaccaagaatgggaaatcatgacataaattactcttttgtcagaagtcaagaactgaaaaatcatgtgtgtgacgtgaccaaagattcttttcaaccaag |
314 |
Q |
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| T |
5548470 |
aaccaagaatgggaaatcatgacataaattactcttttgtcagaagtcaagaactgaaaaatcatgtgtgtgacgtgaccaaagattcttttcaaccaag |
5548371 |
T |
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| Q |
315 |
acaaatcctagtccttaaaaaccctaactaaattcaccaaacaccatttccataaaaggttcc |
377 |
Q |
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|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
5548370 |
acaaatcctagtccttaaaaaccctaaccatattcaccaaacaccatttccataaaaggttcc |
5548308 |
T |
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