View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14673_low_12 (Length: 286)
Name: NF14673_low_12
Description: NF14673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14673_low_12 |
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| [»] scaffold0295 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 12 - 272
Target Start/End: Complemental strand, 14267963 - 14267702
Alignment:
| Q |
12 |
acagaccagaaagaaaagagaagttaacactttgtaacattttcactataaataagtgatcacacaaaatgtcattccccatttagtataaataccaaaa |
111 |
Q |
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| T |
14267963 |
acagaccagaaagaaaagagaagttaacactttgtaacattttcactataaataagtgatcacacaaaatgtcattccccatttagtataaataccaaaa |
14267864 |
T |
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| Q |
112 |
ccttgtcaggaatttcaagcaattcgcctgcagttccaacatctgcagccaaacacggattactttcattctctttaatttccttatatttttc-aaata |
210 |
Q |
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| T |
14267863 |
ccttgtcaggaatttcaagcaattcgcctgcagttccaacatctgcagccaaacacggattactttcattctctttaatttccttgtatttttcaaaata |
14267764 |
T |
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| Q |
211 |
aattaactacattcatgttaaaagtagatatctcaagtaatgcataaatcacaaacaaaata |
272 |
Q |
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| T |
14267763 |
aattaactacattcatgttaaaagtagatatctcaagtaatgcataaatcacaaacaaaata |
14267702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 14241210 - 14241272
Alignment:
| Q |
122 |
aatttcaagcaattcgcctgcagttccaacatctgcagccaaacacggattactttcattctc |
184 |
Q |
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| T |
14241210 |
aatttcaagcaattcagcagcagttccaacatccgcagccaaacacagattactttccttctc |
14241272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 122 - 175
Target Start/End: Complemental strand, 5033115 - 5033062
Alignment:
| Q |
122 |
aatttcaagcaattcgcctgcagttccaacatctgcagccaaacacggattact |
175 |
Q |
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| T |
5033115 |
aatttcaagcaattcagctgcagttccaacatctgcagccaaacacagattact |
5033062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 7991295 - 7991250
Alignment:
| Q |
122 |
aatttcaagcaattcgcctgcagttccaacatctgcagccaaacac |
167 |
Q |
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| T |
7991295 |
aatttcaagcaattcagctgcagttccaacatctgcagccaaacac |
7991250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0295 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0295
Description:
Target: scaffold0295; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 272
Target Start/End: Original strand, 12409 - 12479
Alignment:
| Q |
202 |
tttcaaataaattaactacattcatgttaaaagtagatatctcaagtaatgcataaatcacaaacaaaata |
272 |
Q |
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| T |
12409 |
tttcaaataaattaactaaactcatgttaaaagtaactaactcaagaaatgtataattcacaaataaaata |
12479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0295; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 265
Target Start/End: Complemental strand, 10769 - 10706
Alignment:
| Q |
202 |
tttcaaataaattaactacattcatgttaaaagtagatatctcaagtaatgcataaatcacaaa |
265 |
Q |
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||||||||||| |||||| | |||||||||||||| || |||||| |||| |||||||||||| |
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| T |
10769 |
tttcaaataaactaactaaactcatgttaaaagtaactaactcaagaaatgtataaatcacaaa |
10706 |
T |
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