View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14673_low_13 (Length: 239)
Name: NF14673_low_13
Description: NF14673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14673_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 2551847 - 2552055
Alignment:
| Q |
20 |
cattgaaataagtgatcctataatccatgaaattcttcatgatagctcaataggtcaaatttgttcgagtggacgtaaggatttcgaaggttcttttcga |
119 |
Q |
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| T |
2551847 |
cattgaaataagtgatcctataatccatgaaattcttcatgatagctcaataggtcaaatttgttcgagtggacgtaaggatttcgaaggttcttttcga |
2551946 |
T |
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| Q |
120 |
acaactagaagcgcatctacatcttcatggttaaccaatcctgttgaatataatgaagaaaatgtctcatctcgaacaaggttgttggttcagatggatt |
219 |
Q |
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| T |
2551947 |
acaactagaagcgcatctacatcttcatggttaaccaatcctgttgattataatgaagaaaatgtctcatctcgaacaaggttgttggttcagatggatt |
2552046 |
T |
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| Q |
220 |
ctgatgatg |
228 |
Q |
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||||||||| |
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| T |
2552047 |
ctgatgatg |
2552055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 2562760 - 2562843
Alignment:
| Q |
143 |
ttcatggttaaccaatcctgttgaa---tataatgaagaaaatgtctcatctcgaacaaggttgttggttcagatggattctga |
223 |
Q |
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|||| |||||||||||| |||||| ||| |||| ||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
2562760 |
ttcaaggttaaccaatcatgttgatgattatgatgaggaaaatgtctcatctagaacaaggttgttggttgagatggattctga |
2562843 |
T |
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