View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14673_low_2 (Length: 527)
Name: NF14673_low_2
Description: NF14673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14673_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 68 - 355
Target Start/End: Original strand, 30746839 - 30747126
Alignment:
| Q |
68 |
ggaggaagaggaaaatatttctgaaaaatgcagaatttacctaattctgcagatggaatattctgatcatagacccnnnnnnnctattcttaatcttcat |
167 |
Q |
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| T |
30746839 |
ggaggaagaggaaaatatttctgaaaaatgcagaatttacctaattctgcagatggaatattctgatcatagaccctttttttctattcttaatcttcat |
30746938 |
T |
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| Q |
168 |
caacgtaatcatcttgttcataattttcatctgggtcattgttattttcacttttttacgttaaagtttatacctttttgtggaatttttgtaacaaaat |
267 |
Q |
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| T |
30746939 |
caacgtaatcatcttgttcataattttcatctgggtcattgttattttcacttttttacgttaaagtttatacctttttgtggaatttttgtaacaaaat |
30747038 |
T |
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| Q |
268 |
attgatgttttgtttcattgcagaggcagaggaggttgcaataagaaatatcatagcttgtgggcaaataggagtagcagaatcgtcg |
355 |
Q |
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| T |
30747039 |
attgatgttttgtttcattgcagaggcagaggaggttgcaataagaaatatcatagcttgtgggcaaatacgagtagcagaatcgtcg |
30747126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 381 - 512
Target Start/End: Original strand, 30747164 - 30747295
Alignment:
| Q |
381 |
gtataataaagcaaaacaaaaaggaaagaattcatattaagattgttgacaaggtacgatgtaagatgtttgttgcttgaagaattttgtttttctgttg |
480 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30747164 |
gtataataaagcaaaacaaaaaggaaagaattcatattaagattgttgacaaggtacgatgtaagatgtttgttgcttgaagaattttgtttttctgttg |
30747263 |
T |
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| Q |
481 |
ttttccgtgattgttggaaatttagttctgtg |
512 |
Q |
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| T |
30747264 |
ttttccgtgattgttggaaatttagttctgtg |
30747295 |
T |
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