View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14673_low_3 (Length: 526)
Name: NF14673_low_3
Description: NF14673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14673_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 11 - 322
Target Start/End: Complemental strand, 38452927 - 38452616
Alignment:
| Q |
11 |
aagaatatccaaaggggttcagtttttccactcatcattgatgagcgtaatccatatgcatatggaatgcttcctttttcacttttaactcatatcaact |
110 |
Q |
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| T |
38452927 |
aagaaaatccaaaggggttcagtttttccactcatcattgatgagcgtaatccatatgcatatggaatgcttcttttttcacttttaactcatatcaact |
38452828 |
T |
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| Q |
111 |
tcatgtctgtagtgactatgaatattagtttcaactttcaacttattcaggatgattagagatagataaaacagaaatatgaataattaaataggaagaa |
210 |
Q |
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| T |
38452827 |
tcatgtctgtagtgactatgattattaatttcaactttcaacttattcaggatgattagagatagataaaacagaaatatgaataattaaataggaagaa |
38452728 |
T |
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| Q |
211 |
agaacgtgatagggactcgactcgagagtcttcttcctttttaagggagggtttctcaagtgcttagatacaagtcagaatgatgtgatattttgttgaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38452727 |
agaacgtgatagggactcgactcgagagtcttcttcctttttaagggagggtttctcaagtgcttagatacaagtcagaatgatgtgatattttgttgaa |
38452628 |
T |
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| Q |
311 |
aatgtgtagagc |
322 |
Q |
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| T |
38452627 |
aatgtgtagagc |
38452616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 381 - 512
Target Start/End: Complemental strand, 38452557 - 38452426
Alignment:
| Q |
381 |
gtacctcttatctgttgagattagcaatgaagaattgaagatggtaaattacaaatcaggaaaccaaaaaattagtttgtgacattagttaattaggctg |
480 |
Q |
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| T |
38452557 |
gtacctcttatctgttgagattagcaatgaagaattgaagatggtaaattacaaatcaggaaaccaaaaaattagtttgtgacattagttaattaggctg |
38452458 |
T |
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| Q |
481 |
ctgaaatttgtgcatatcacatgtactctgtg |
512 |
Q |
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| T |
38452457 |
ctgaaatttgtgcatataaaatgtactctgtg |
38452426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 416 - 489
Target Start/End: Original strand, 39850687 - 39850760
Alignment:
| Q |
416 |
tgaagatggtaaattacaaatcaggaaaccaaaaaattagtttgtgacattagttaattaggctgctgaaattt |
489 |
Q |
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| T |
39850687 |
tgaagatggtaaattactaatcaggaagccagaaaattagtttgtgatgttagttaattaggctgctgcaattt |
39850760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 147
Target Start/End: Original strand, 39849830 - 39849885
Alignment:
| Q |
88 |
ttcacttttaactcatatcaacttcatgtctgtagtgactatgaatattagtttcaactt |
147 |
Q |
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| T |
39849830 |
ttcacttttgactcatatcaacttcatgtctgaag----tatgattattagtttcaactt |
39849885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 146 - 230
Target Start/End: Original strand, 44475656 - 44475743
Alignment:
| Q |
146 |
tttcaacttattcaggatgattagagatagataaaac---agaaatatgaataattaaataggaagaaagaacgtgatagggactcga |
230 |
Q |
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| T |
44475656 |
tttcaacttattcaggatgattagagatagataaaacataataaatatgaataattaaataggaagaaagaatgtgacagggactcga |
44475743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 281
Target Start/End: Original strand, 44400031 - 44400063
Alignment:
| Q |
249 |
ttttaagggagggtttctcaagtgcttagatac |
281 |
Q |
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| T |
44400031 |
ttttaagggagggtttcccaagtgcttagatac |
44400063 |
T |
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