View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14673_low_4 (Length: 459)

Name: NF14673_low_4
Description: NF14673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14673_low_4
NF14673_low_4
[»] chr7 (15 HSPs)
chr7 (14-441)||(26609667-26610110)
chr7 (140-383)||(26616936-26617184)
chr7 (99-383)||(26652219-26652502)
chr7 (99-383)||(26632461-26632741)
chr7 (136-300)||(26622426-26622589)
chr7 (201-383)||(26640330-26640515)
chr7 (23-147)||(26623121-26623240)
chr7 (99-173)||(26640522-26640597)
chr7 (386-441)||(26652529-26652584)
chr7 (386-441)||(26640250-26640305)
chr7 (386-441)||(26616856-26616911)
chr7 (386-441)||(26622324-26622379)
chr7 (386-441)||(26619895-26619950)
chr7 (402-441)||(26632179-26632218)
chr7 (21-62)||(26617607-26617648)


Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-156; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 14 - 441
Target Start/End: Complemental strand, 26610110 - 26609667
Alignment:
Q  14 ccagttatgacctttttgtatctataacctaaatcagagctaatacaacatgttt--gggagactcaatatatttaccaaatattgtagaaaattattcg 111  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||  |||||||||||||||||||| |||||| |||||||||||||||    
T  26610110 ccagttatgacctttttgtatctataacctaaatcagaattaatacaacatgtttttgggagactcaatatatttacgaaatat-gtagaaaattattcg 26610012  T
Q  112 gtatccatataatttgcaaagcaataatttcaagtaaataacaaaacaaaggtcaaataaaactagtggtgatcacaaattgcaacctagatagggtcca 211  Q
    ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26610011 gtatccatat---ttgcaaagcaataatttcaagtaaataacaaaacaaaggtcaaataaaactagtggtgatcacaaattgcaacctagatagggtcca 26609915  T
Q  212 ttaaatttaagtccctcatataatgaatgtcatgattggaaggggaacccttccctaccttggaatgaactttcttctggaccatgacagtctg------ 305  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||          
T  26609914 ttaaatttaagtccctcatataatgtatgtcatgattggaaggagaacccttccctaccttcgaatgaactttcttctggaccatgacaatctgatataa 26609815  T
Q  306 -------atatatctctagtacagtttttcttttgatataaaaaatg----tatagatataatgaccatgattcttgattctatat--atatttaattaa 392  Q
           |||||||||| |||||||||||||||||||||||||||||    ||||||||||||||| || |||| |||||||||||   || |||| |||    
T  26609814 aaaatgaatatatctcttgtacagtttttcttttgatataaaaaatgaatatatagatataatgacaataattcgtgattctatattagtaattaa-taa 26609716  T
Q  393 tatcaatagttggatccaaccatggaaacccctcgtgtgcatggagttt 441  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26609715 tatcaacagttggatccaaccatggaaacccctcgtgtgcatggagttt 26609667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 140 - 383
Target Start/End: Complemental strand, 26617184 - 26616936
Alignment:
Q  140 ttcaagtaaataacaaaaca--aaggtcaaataaaactagtggtgatcacaaattgcaacctagatagggtccattaaatttaagtccctcatataatga 237  Q
    ||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||     
T  26617184 ttcaagtaaataacaaaacacaaaggtcaaataaaactagtggtaatcacaaattgcaacctagatggggtccattaaatt-aagtccctcatataatgt 26617086  T
Q  238 atgtcatgattggaaggggaacccttccctaccttggaatgaactttcttctggaccatgacagtctgatatatctctagtacagtttttcttttgatat 337  Q
    |||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26617085 atgtcatgattggaagggaaacccctccctaccttcgaatgaactttcttctggaccatgacagtctgatatatctctagtacagtttttcttttgatat 26616986  T
Q  338 aaaaaatg----tatagatataatgaccatgattcttgattctatatata 383  Q
    ||||||||    ||||||||||||||||||||||||||||||||||||||    
T  26616985 aaaaaatgaatatatagatataatgaccatgattcttgattctatatata 26616936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 99 - 383
Target Start/End: Original strand, 26652219 - 26652502
Alignment:
Q  99 agaaaattattcggtatccatataatttgcaaagcaataatttcaagtaaataacaaaacaaaggtcaaataaaactagtggtgatcacaaattgcaacc 198  Q
    ||||||||||| |||||||||||   || | || | ||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  26652219 agaaaattatttggtatccatat---ttcccaaacgataatttaatgtaaataacaaaacaaaggtcaaataaaactagtggagatcacaaattgcagcc 26652315  T
Q  199 tagatagggtccattaaatttaagtccctcatataatgaatgtcatgattggaaggggaacccttccctaccttggaatgaactttcttctggaccatga 298  Q
    ||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26652316 taggtagggtccattaaatt-aagtccctcatataatgtatgtcatgattggaaggggaacccttccctaccttcgaatgaactttcttctggaccatga 26652414  T
Q  299 cagtctgatatatctctagtacagtttttcttttgatataaaaaatgtata---gatataatgaccatgattcttgattctatatata 383  Q
    || |||||||||| ||||||||||||||||||||||||||||||||| |||    |||||||||| | ||||||||||||||||||||    
T  26652415 caatctgatatatatctagtacagtttttcttttgatataaaaaatgaatatataatataatgacaacgattcttgattctatatata 26652502  T

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Target: chr7; HSP #4
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 99 - 383
Target Start/End: Complemental strand, 26632741 - 26632461
Alignment:
Q  99 agaaaattattcggtatccatataatttgcaaagcaataatttcaagtaaataacaaaacaaaggtcaaataaaactagtggtgatcacaaattgcaacc 198  Q
    |||||||||||||||||||||||   || ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  26632741 agaaaattattcggtatccatat---ttccaaagcaataatttcaagtaaataacaaagcaaaggtcaaataaaactagtgctgatcacaaattgcaacc 26632645  T
Q  199 -tagatagggtccattaaatttaagtccctcatataatgaatgtcatgattggaaggggaacccttccctaccttggaatgaactttcttctggaccatg 297  Q
     |||||||||||||||  | |||| ||||||||| | ||  ||  ||||||||||||| |||| ||||||||||| || ||| |||||||||||| ||||    
T  26632644 atagatagggtccattctaattaaatccctcata-attgtctgcgatgattggaagggaaaccgttccctaccttcgactgatctttcttctggaacatg 26632546  T
Q  298 acagtctgatatatctctagtacagtttttcttttgatataaaa----aatgtatagatataatgaccatgattcttgattctatatata 383  Q
    ||||||||||||||     |||||||||||||||||||||||||    ||| ||||||||||||||| ||||||||||||||||||||||    
T  26632545 acagtctgatatat-----gtacagtttttcttttgatataaaaattgaatatatagatataatgacaatgattcttgattctatatata 26632461  T

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Target: chr7; HSP #5
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 136 - 300
Target Start/End: Complemental strand, 26622589 - 26622426
Alignment:
Q  136 taatttcaagtaaataacaaaacaaaggtcaaataaaactagtggtgatcacaaattgcaacctagatagggtccattaaatttaagtccctcatataat 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26622589 taatttcaagtaaataacaaaacaaaggtcaaataaaactagtggcgatcacaaattgcaacctagatagggtccattaaa-ttaagtccctcatataat 26622491  T
Q  236 gaatgtcatgattggaaggggaacccttccctaccttggaatgaactttcttctggaccatgaca 300  Q
    | ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26622490 gtatgtcatgatttgaaggggaacccttccctaccttcgaatgaactttcttctggaccatgaca 26622426  T

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Target: chr7; HSP #6
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 201 - 383
Target Start/End: Complemental strand, 26640515 - 26640330
Alignment:
Q  201 gatagggtccattaaatttaagtccctcatataatgaatgtcatgattggaaggggaacccttccctaccttggaatgaactttcttctggaccatgaca 300  Q
    |||||||||||||  | |||| ||||||||| | ||  || |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  26640515 gatagggtccattctaattaaatccctcata-attgtctgccatgattggaagggaaacccttccctaccttggaatgatctttcttctggaccatgaca 26640417  T
Q  301 gtctgatatatctctagtacagtttttcttttgatataaaaaatg----tatagatataatgaccatgattcttgattctatatata 383  Q
    |||||||||||||||||||||||||||||||| |||| |||||||    ||||||||||||||| ||||||||||||||||||||||    
T  26640416 gtctgatatatctctagtacagtttttcttttcatatcaaaaatgaatatatagatataatgacaatgattcttgattctatatata 26640330  T

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Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 26623240 - 26623121
Alignment:
Q  23 acctttttgtatctataacctaaatcagagctaatacaacatgtttgggagactcaatatatttaccaaatattgtagaaaattattcggtatccatata 122  Q
    |||||||||||||||||||||||||||||| ||| ||| |||||||| ||||||||||  ||||| |||||| |||||||||||||| | |||||||       
T  26623240 acctttttgtatctataacctaaatcagaggtaacacaccatgtttgagagactcaat-catttatcaaata-tgtagaaaattatttgttatccat--- 26623146  T
Q  123 atttgcaaagcaataatttcaagta 147  Q
    |||| |||||||||||||| |||||    
T  26623145 atttccaaagcaataattttaagta 26623121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 99 - 173
Target Start/End: Complemental strand, 26640597 - 26640522
Alignment:
Q  99 agaaaattattcggtatccatata-atttgcaaagcaataatttcaagtaaataacaaaacaaaggtcaaataaaa 173  Q
    ||||||||||| |||||||||||| |||| | ||| ||||||||||||||||||||||||||||||||||||||||    
T  26640597 agaaaattatttggtatccatatatatttcccaagaaataatttcaagtaaataacaaaacaaaggtcaaataaaa 26640522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 386 - 441
Target Start/End: Original strand, 26652529 - 26652584
Alignment:
Q  386 taattaatatcaatagttggatccaaccatggaaacccctcgtgtgcatggagttt 441  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26652529 taattaatatcaacagttggatccaaccatggaaacccctcgtgtgcatggagttt 26652584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 386 - 441
Target Start/End: Complemental strand, 26640305 - 26640250
Alignment:
Q  386 taattaatatcaatagttggatccaaccatggaaacccctcgtgtgcatggagttt 441  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  26640305 taattaatatcaacagttggatccaaccatggatacccctcgtgtgcatggagttt 26640250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 386 - 441
Target Start/End: Complemental strand, 26616911 - 26616856
Alignment:
Q  386 taattaatatcaatagttggatccaaccatggaaacccctcgtgtgcatggagttt 441  Q
    ||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||    
T  26616911 taattaatatcaacagttggatccagccatgaaaacccctcgtgtgcatggagttt 26616856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 386 - 441
Target Start/End: Complemental strand, 26622379 - 26622324
Alignment:
Q  386 taattaatatcaatagttggatccaaccatggaaacccctcgtgtgcatggagttt 441  Q
    ||||||||| ||| || |||||||||||||||||||||||||||||||||||||||    
T  26622379 taattaatagcaacaggtggatccaaccatggaaacccctcgtgtgcatggagttt 26622324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 441
Target Start/End: Complemental strand, 26619950 - 26619895
Alignment:
Q  386 taattaatatcaatagttggatccaaccatggaaacccctcgtgtgcatggagttt 441  Q
    ||||||||| ||| || |||||||||||||||||||||||||||||||| ||||||    
T  26619950 taattaatagcaacaggtggatccaaccatggaaacccctcgtgtgcatagagttt 26619895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 402 - 441
Target Start/End: Complemental strand, 26632218 - 26632179
Alignment:
Q  402 ttggatccaaccatggaaacccctcgtgtgcatggagttt 441  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  26632218 ttggatccagccatggaaacccctcgtgtgcatggagttt 26632179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 26617648 - 26617607
Alignment:
Q  21 tgacctttttgtatctataacctaaatcagagctaatacaac 62  Q
    ||||||||||||||||||| |||| ||||| |||||||||||    
T  26617648 tgacctttttgtatctatagcctatatcagggctaatacaac 26617607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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