View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14674_high_10 (Length: 376)
Name: NF14674_high_10
Description: NF14674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14674_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 17 - 363
Target Start/End: Complemental strand, 4365235 - 4364889
Alignment:
| Q |
17 |
aagtttcttgtccaaaaatgaaaccatctattggtcacaaactcaaagcaaagagttcaatacaagaaactcatttcacaacagacaacaacaattctgc |
116 |
Q |
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| T |
4365235 |
aagtttcttgtccaaaaatgaaaccatctattggtcacaaactcaaagcaaagagttcaatacaagaaactcatttcacaacagacaacaacaattctgc |
4365136 |
T |
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| Q |
117 |
tgtaaagaaagacaagaaatgggagaagattcacacgtcatcggtcactcataaccacgatgctgattcaactagagtaccggtgtttgtgatgttgcca |
216 |
Q |
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| T |
4365135 |
tgtaaagaaagacaagaaatgggagaagattcacacgtcatcggtcactcataaccacgatggtgattcgaatagagtaccggtgtttgtgatgttgcca |
4365036 |
T |
|
| Q |
217 |
ttagacacggtaacaatgggaggaaaattgaataaagcaagggcaatgaatgctagtttgatggctttgaagagtgctggtgttgaaggagtaatggttg |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4365035 |
ttagacacggtaacaatgggaggaaaattgaataaagcaagagcaatgaatgctagtttgatggctttgaagagtgctggtgttgaaggagtaatggttg |
4364936 |
T |
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| Q |
317 |
atgcttggtggggtttggtcgaaaaagatggtccaatgaagtataat |
363 |
Q |
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| T |
4364935 |
atgcttggtggggtttggtcgaaaaagatggtccaatgaagtataat |
4364889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 58 - 363
Target Start/End: Complemental strand, 4372787 - 4372482
Alignment:
| Q |
58 |
ctcaaagcaaagagttcaatacaagaaactcatttcacaacagacaacaacaattctgctgtaaagaaagacaagaaatgggagaagattcacacgtcat |
157 |
Q |
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| T |
4372787 |
ctcaaagcaaagagttcaatgcaagaaacacatttcacaaaggaaaacaccaactctgcagttaaggaaaacaagaaaagggagaaggttctcgcgccat |
4372688 |
T |
|
| Q |
158 |
cggtcactcataaccacgatgctgattcaactagagtaccggtgtttgtgatgttgccattagacacggtaacaatgggaggaaaattgaataaagcaag |
257 |
Q |
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| T |
4372687 |
cgattgctcataaccacgatgctgattcaactagagtaccggtgtttgtgatgttgccattagacacggtaacaatgggaggaaaattgaataaagcaag |
4372588 |
T |
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| Q |
258 |
ggcaatgaatgctagtttgatggctttgaagagtgctggtgttgaaggagtaatggttgatgcttggtggggtttggtcgaaaaagatggtccaatgaag |
357 |
Q |
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| T |
4372587 |
agcaatgaatgctagtttgatggctttgaagagtgctggtgttgaaggagtaatggttgatgcttggtggggtttggtcgaaaaagatggtccaatgaag |
4372488 |
T |
|
| Q |
358 |
tataat |
363 |
Q |
| |
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|||||| |
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| T |
4372487 |
tataat |
4372482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 193 - 347
Target Start/End: Original strand, 41042491 - 41042645
Alignment:
| Q |
193 |
gtaccggtgtttgtgatgttgccattagacacggtaacaatgggaggaaaattgaataaagcaagggcaatgaatgctagtttgatggctttgaagagtg |
292 |
Q |
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||||| || ||||||||| | ||||| || || ||||||||||||||||| ||||| || |||| ||||||||||||||||||||||||||||| |||| |
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| T |
41042491 |
gtaccagtttttgtgatgcttccattggatacagtaacaatgggaggaaacttgaacaagccaagagcaatgaatgctagtttgatggctttgaaaagtg |
41042590 |
T |
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| Q |
293 |
ctggtgttgaaggagtaatggttgatgcttggtggggtttggtcgaaaaagatgg |
347 |
Q |
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|||| |||||||| || |||||||||| ||||||||||||||| ||||||||||| |
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| T |
41042591 |
ctggagttgaaggggtgatggttgatgtttggtggggtttggttgaaaaagatgg |
41042645 |
T |
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