View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14674_high_14 (Length: 315)
Name: NF14674_high_14
Description: NF14674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14674_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 49424245 - 49423953
Alignment:
| Q |
1 |
aaccgatctagacacagagaattcatcaaaggaatttatgtaaattagttggaattatatttttaaagactactaaattactaatcataaactaagggaa |
100 |
Q |
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| T |
49424245 |
aaccgatctagacacagagaattcatcaaaggaatttatgtaaattagttggaattatatttttaaagactactaaattactaatcataaactaagggaa |
49424146 |
T |
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| Q |
101 |
tcatcatgaatagacttcaaatcaaaagatgaatctagcaaggctcgtggttctggtgcaacttggatggcgcttacggagacttccgttccatggtggt |
200 |
Q |
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| T |
49424145 |
tcatcatgaatagacttcaaatcaaaagatgaatctagcaaggctcgtggttctggtgcaacttggatggcgcttacggagacttccgttccatggtggt |
49424046 |
T |
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| Q |
201 |
ttcatgaatggagtgattatccagattactaatgacaggtttgtatcaactgctccttgaatacttagtatgcctgtggagaaccgagaaact |
293 |
Q |
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| T |
49424045 |
ttcatgaatggagcgattatccagattactaatgacaggtttgtatcaactgctccttgaatacttagtatgcctgtggagaaccgagaaact |
49423953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 130 - 253
Target Start/End: Original strand, 49416533 - 49416656
Alignment:
| Q |
130 |
tgaatctagcaaggctcgtggttctggtgcaacttggatggcgcttacggagacttccgttccatggtggtttcatgaatggagtgattatccagattac |
229 |
Q |
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| T |
49416533 |
tgaatctagtaaggctgatggatttggtgcagcttggatgacacttacagagacttccgcttcgtggtggtttcatgaacggagtgattatccagattac |
49416632 |
T |
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| Q |
230 |
taatgacaggtttgtatcaactgc |
253 |
Q |
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| T |
49416633 |
cattgatacgtttgtatcaactgc |
49416656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 43362976 - 43363025
Alignment:
| Q |
188 |
gttccatggtggtttcatgaatggagtgat--tatccagattactaatga |
235 |
Q |
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| T |
43362976 |
gttccatggtggtttcatgaaagaagtgattatatccagattactaatga |
43363025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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