View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14674_high_7 (Length: 439)

Name: NF14674_high_7
Description: NF14674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14674_high_7
NF14674_high_7
[»] chr5 (1 HSPs)
chr5 (13-420)||(28152064-28152468)
[»] chr6 (6 HSPs)
chr6 (90-129)||(12877811-12877850)
chr6 (93-129)||(20759303-20759339)
chr6 (90-127)||(14579001-14579038)
chr6 (90-129)||(2936651-2936690)
chr6 (90-129)||(3836144-3836183)
chr6 (92-130)||(15951541-15951579)
[»] chr4 (7 HSPs)
chr4 (90-129)||(6685778-6685817)
chr4 (90-129)||(31768285-31768324)
chr4 (90-130)||(13250994-13251034)
chr4 (90-129)||(572234-572273)
chr4 (90-129)||(580637-580676)
chr4 (90-129)||(6664424-6664463)
chr4 (90-129)||(6682323-6682362)
[»] chr7 (3 HSPs)
chr7 (88-129)||(38414115-38414156)
chr7 (90-129)||(37006261-37006300)
chr7 (20-93)||(37006353-37006426)
[»] chr1 (2 HSPs)
chr1 (92-129)||(48715079-48715116)
chr1 (90-130)||(27793839-27793879)
[»] chr2 (1 HSPs)
chr2 (90-126)||(80466-80502)
[»] scaffold0321 (1 HSPs)
scaffold0321 (90-129)||(17970-18009)
[»] scaffold0019 (1 HSPs)
scaffold0019 (90-129)||(174071-174110)
[»] chr3 (2 HSPs)
chr3 (90-129)||(6240659-6240698)
chr3 (90-129)||(26361893-26361932)
[»] scaffold0933 (1 HSPs)
scaffold0933 (90-130)||(1586-1626)
[»] chr8 (2 HSPs)
chr8 (94-129)||(29275385-29275420)
chr8 (90-124)||(29260363-29260397)


Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 13 - 420
Target Start/End: Original strand, 28152064 - 28152468
Alignment:
Q  13 agcaaaggtggtaacacaatttggaattaaaagcatatctagaaacccaagtcaaacacaataattactcatatgataatatttgaaacttttgaaatat 112  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28152064 agcaaaggtggtaacacagtttggaattaaaagcatgtctagaaacccaagtcaaacacaataattactcatatgataatatttgaaacttttgaaatat 28152163  T
Q  113 actcaaaatttacaacatcacgaacctgccatgcttttatacgtgatttataatctgctgcagcgaatggtgacatgttgttggtagacttcactttccg 212  Q
    ||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||   ||||||||||||||||||    
T  28152164 actcaaaatttacaacaccacgaacccgccatacttttctacgtgatttataatctactgcagcgaatggtgacatgtt---ggtagacttcactttccg 28152260  T
Q  213 actcgattcgctaagctagcacatctcctcgcttagcaaaatcactcaactcaacttctttgcctttctagcttgctcttcattcatggtccttcaatac 312  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28152261 actcaattcgctaagctagcacatctcctcgcttagcaaaatcactcaactcaacttctttgcctttttagcttgctcttcattcatggtccttcaatac 28152360  T
Q  313 tacaaaattgcattggaaaaaagatcatttcgtaacacatgaaatattacatgtgatctagttatgtaatacttacattaattgcattgagtgattatcg 412  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  28152361 tacaaaattgcattgggaaaaagatcatttcgtaacacatgaaatattacacgggatctagttatgtaatacttacattaattgcattgagtgattatcg 28152460  T
Q  413 ttaggttt 420  Q
    ||||||||    
T  28152461 ttaggttt 28152468  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 129
Target Start/End: Original strand, 12877811 - 12877850
Alignment:
Q  90 aatatttgaaacttttgaaatatactcaaaatttacaaca 129  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  12877811 aatatttgaaacttttgaaatatactcaaaatttacaaca 12877850  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 20759303 - 20759339
Alignment:
Q  93 atttgaaacttttgaaatatactcaaaatttacaaca 129  Q
    |||||||||||||||||||||||||||||||||||||    
T  20759303 atttgaaacttttgaaatatactcaaaatttacaaca 20759339  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 14579038 - 14579001
Alignment:
Q  90 aatatttgaaacttttgaaatatactcaaaatttacaa 127  Q
    |||||||||||||||||||||||| |||||||||||||    
T  14579038 aatatttgaaacttttgaaatataatcaaaatttacaa 14579001  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 129
Target Start/End: Original strand, 2936651 - 2936690
Alignment:
Q  90 aatatttgaaacttttgaaatatactcaaaatttacaaca 129  Q
    ||||||||||| |||||||||||| |||||||||||||||    
T  2936651 aatatttgaaatttttgaaatataatcaaaatttacaaca 2936690  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 129
Target Start/End: Original strand, 3836144 - 3836183
Alignment:
Q  90 aatatttgaaacttttgaaatatactcaaaatttacaaca 129  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  3836144 aatatttgaaacttttgaaatatgttcaaaatttacaaca 3836183  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 130
Target Start/End: Complemental strand, 15951579 - 15951541
Alignment:
Q  92 tatttgaaacttttgaaatatactcaaaatttacaacat 130  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  15951579 tatttaaaacttttgaaatatactcaaaatttagaacat 15951541  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 129
Target Start/End: Complemental strand, 6685817 - 6685778
Alignment:
Q  90 aatatttgaaacttttgaaatatactcaaaatttacaaca 129  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6685817 aatatttgaaacttttgaaatatactcaaaatttacaaca 6685778  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 129
Target Start/End: Original strand, 31768285 - 31768324
Alignment:
Q  90 aatatttgaaacttttgaaatatactcaaaatttacaaca 129  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31768285 aatatttgaaacttttgaaatatactcaaaatttacaaca 31768324  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 13250994 - 13251034
Alignment:
Q  90 aatatttgaaacttttgaaatatactcaaaatttacaacat 130  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  13250994 aatatttgaaacttttgaaatataatcaaaatttacaacat 13251034  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 129
Target Start/End: Original strand, 572234 - 572273
Alignment:
Q  90 aatatttgaaacttttgaaatatactcaaaatttacaaca 129  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  572234 aatattagaaacttttgaaatatactcaaaatttacaaca 572273  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 129
Target Start/End: Original strand, 580637 - 580676
Alignment:
Q  90 aatatttgaaacttttgaaatatactcaaaatttacaaca 129  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  580637 aatatttaaaacttttgaaatatactcaaaatttacaaca 580676  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 129
Target Start/End: Original strand, 6664424 - 6664463
Alignment:
Q  90 aatatttgaaacttttgaaatatactcaaaatttacaaca 129  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  6664424 aatatttgaaacttttgaaatacactcaaaatttacaaca 6664463  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 129
Target Start/End: Complemental strand, 6682362 - 6682323
Alignment:
Q  90 aatatttgaaacttttgaaatatactcaaaatttacaaca 129  Q
    |||||||||||||||| |||||||||||||||||| ||||    
T  6682362 aatatttgaaacttttaaaatatactcaaaatttataaca 6682323  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 38414156 - 38414115
Alignment:
Q  88 ataatatttgaaacttttgaaatatactcaaaatttacaaca 129  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  38414156 ataatatttaaaacttttgaaatatactcaaaatttacaaca 38414115  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 129
Target Start/End: Complemental strand, 37006300 - 37006261
Alignment:
Q  90 aatatttgaaacttttgaaatatactcaaaatttacaaca 129  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  37006300 aatatttgaaacttttaaaatatactcaaaatttacaaca 37006261  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 37006426 - 37006353
Alignment:
Q  20 gtggtaacacaatttggaattaaaagcatatctagaaacccaagtcaaacacaataattactcatatgataata 93  Q
    ||||| ||| ||||||||||||||| ||| |||| |||  |||||||||||  ||||||| | |||||||||||    
T  37006426 gtggttacaaaatttggaattaaaaacatgtctacaaaatcaagtcaaacattataattaataatatgataata 37006353  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 48715079 - 48715116
Alignment:
Q  92 tatttgaaacttttgaaatatactcaaaatttacaaca 129  Q
    ||||||||||||||||||||||||||||||||||||||    
T  48715079 tatttgaaacttttgaaatatactcaaaatttacaaca 48715116  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 27793839 - 27793879
Alignment:
Q  90 aatatttgaaacttttgaaatatactcaaaatttacaacat 130  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  27793839 aatatttaaaacttttgaaatatactcaaaatttacaacat 27793879  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 80502 - 80466
Alignment:
Q  90 aatatttgaaacttttgaaatatactcaaaatttaca 126  Q
    |||||||||||||||||||||||||||||||||||||    
T  80502 aatatttgaaacttttgaaatatactcaaaatttaca 80466  T

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Target: scaffold0321 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 129
Target Start/End: Complemental strand, 18009 - 17970
Alignment:
Q  90 aatatttgaaacttttgaaatatactcaaaatttacaaca 129  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  18009 aatatttgaaacttttgaaatatacttaaaatttacaaca 17970  T

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Target: scaffold0019 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 129
Target Start/End: Complemental strand, 174110 - 174071
Alignment:
Q  90 aatatttgaaacttttgaaatatactcaaaatttacaaca 129  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  174110 aatatttgaaacttttgaaatataatcaaaatttacaaca 174071  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 129
Target Start/End: Original strand, 6240659 - 6240698
Alignment:
Q  90 aatatttgaaacttttgaaatatactcaaaatttacaaca 129  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  6240659 aatatttaaaacttttgaaatatactcaaaatttacaaca 6240698  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 129
Target Start/End: Complemental strand, 26361932 - 26361893
Alignment:
Q  90 aatatttgaaacttttgaaatatactcaaaatttacaaca 129  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  26361932 aatatttgaaacttttgaaatatactcaaaaattacaaca 26361893  T

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Target: scaffold0933 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 1586 - 1626
Alignment:
Q  90 aatatttgaaacttttgaaatatactcaaaatttacaacat 130  Q
    |||||||||||||||| ||||||| ||||||||||||||||    
T  1586 aatatttgaaacttttaaaatataatcaaaatttacaacat 1626  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 129
Target Start/End: Complemental strand, 29275420 - 29275385
Alignment:
Q  94 tttgaaacttttgaaatatactcaaaatttacaaca 129  Q
    ||||||||||||||||||||| ||||||||||||||    
T  29275420 tttgaaacttttgaaatatacacaaaatttacaaca 29275385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 124
Target Start/End: Complemental strand, 29260397 - 29260363
Alignment:
Q  90 aatatttgaaacttttgaaatatactcaaaattta 124  Q
    ||||||||||||||||||||||||| |||||||||    
T  29260397 aatatttgaaacttttgaaatatacacaaaattta 29260363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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