View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14674_high_8 (Length: 429)
Name: NF14674_high_8
Description: NF14674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14674_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 20 - 416
Target Start/End: Original strand, 43576203 - 43576592
Alignment:
| Q |
20 |
tttgccgtcaccaaactcagttgttgcactctacttatcttcatgacattggattgagctcaaataactttgtattcgacttcaccaaatcatatttaaa |
119 |
Q |
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| T |
43576203 |
tttgccgtcaccaaactcagttattgcactctacttatcttcatgacattggattgagctcaaataactttatattggact-caccaaatcatatttaaa |
43576301 |
T |
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| Q |
120 |
atatgaactcaaaatgagtcggttgatcttt-attcaacagttggaatctattgattgtgagannnnnnnccggcatcaaatccaaatctattattgatt |
218 |
Q |
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| T |
43576302 |
atatgaactcaaaatgagtcggttgatcttttattcaacagttggaatctattgattgtgagatttttttccggcatcaaatccaaatctattattgatt |
43576401 |
T |
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| Q |
219 |
tggtttaattatcataccatgaaagacaacatactaaatgtgacaatcaatatgtaaccgaaacagacggaaatgaattgtatatacatacatacaagca |
318 |
Q |
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| T |
43576402 |
tgctttaattatcataccatgaaagacaacaaactaaatgt-acaatcaatat--aaccgaaacagacggaaatgaattgtatatac----atacaagca |
43576494 |
T |
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| Q |
319 |
atgctcagtgattatgacaatcaaattaaaggttaattacaatgcatatttgttggtttcacagtagatttaccaaaatcatggtaaaccattgtgat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43576495 |
atgctcagtgattatgacaatcaaattaaaggttaattacaatgcatatttgttggtttcacagtagatttaccaaaatcatggtaaaccattgtgat |
43576592 |
T |
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