View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14674_low_1 (Length: 598)
Name: NF14674_low_1
Description: NF14674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14674_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 18 - 580
Target Start/End: Complemental strand, 28186246 - 28185699
Alignment:
| Q |
18 |
atattaaaaaactataagcatcatgacaatgttaaggattttcttaattgaacttattcaaatcatacacgtcgacacatttccatgatgtgaaagaaac |
117 |
Q |
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| T |
28186246 |
atattaaaaaactataagcatcatgacaatgttaaggattttcttaattgaacttattcaaatcatacacgtcgacacatttccataatgtgaaagaaac |
28186147 |
T |
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| Q |
118 |
aattaaagaggatttaaaagtttggttatgcttttcaaacaaaaactttcttacgtatttccaattaagtgaaacaaataaaaccttttgactgcttttc |
217 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28186146 |
aatttaagaggattaaaaagtttggttatgcttttcaaacaaaaactttcttacgtatttccaattaagtgaaacaaataaaaccttttgactgcttttc |
28186047 |
T |
|
| Q |
218 |
aaataaaatcttattgctaattcaatcaacttattgttaagagtctcatgttggaagagatacagtctcaacaaacaaacgtttatagatgaaaataata |
317 |
Q |
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| T |
28186046 |
aaataaaatcttattgctaattcaatcaacttatttttaagagtttcatgttggaagagatacaatctcaacaaacaaacgtttatagatg---aggata |
28185950 |
T |
|
| Q |
318 |
atcatcgccttaaaaaataattttataaagtttaagctaaccccaattctaacgttaatctttttgttctgatgttaaactaataggaacttataaaacc |
417 |
Q |
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||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
28185949 |
atcatcgtcttaaaaaataattttataaagtttaaactaaccccaattctaacgttaatatttttgttctaatgttaaactaataggaacttataaaacc |
28185850 |
T |
|
| Q |
418 |
atgataggatacaaaaaacttggcatgtacaacaaagttcaagtacatgttcattaaatattgaaagtgtttagggaatggaaatcaagatattaatatg |
517 |
Q |
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|| |||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28185849 |
atcataggatacaaaaaacttggcacgtacaactaa------------gttcattaaatattgaaagtgtttagggaatggaaatcaagatattaatatg |
28185762 |
T |
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| Q |
518 |
gcagtttaataatggacgcattacttaacttagacatttagacataaaacccaaaactattga |
580 |
Q |
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| T |
28185761 |
gcagtttaataatggacacattacttaacttagacatttagacataaaacccaaaaccattga |
28185699 |
T |
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