View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14674_low_13 (Length: 350)
Name: NF14674_low_13
Description: NF14674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14674_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 339
Target Start/End: Complemental strand, 33620555 - 33620235
Alignment:
| Q |
19 |
attctgcaccataacatatctaatattctcatagatttcttttatcatatgtgttgtgcttgcgagataaaattatagt--tttttaacatagcataact |
116 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33620555 |
attccgcaccataacatatctaatattctcatagatttcttttatcatatgcgttgtgcttgcgagataaaattatagtagtttttaacatagcataact |
33620456 |
T |
|
| Q |
117 |
taatacaaagctgattttattactgaataaataaatacaannnnnnnnaaagaagctaattttacatcaataatgttacatgatagaccaggaatattac |
216 |
Q |
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||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33620455 |
taatacaaagctgattttattactgaataaataca-act-ttttttttaaagaagctaattttacatcaataatgttacatgatagaccaggaatattac |
33620358 |
T |
|
| Q |
217 |
aatcaatatgttattgggtcaacgacattttctgctcctggacaggcctagtccagaatgctgataatttctgtctttgttttggatcaccaccaccaaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33620357 |
aatcaatatgttattgggtcaacgacattttctgctcctggacagacctagtccagaatgctgataatttctgtctttgttttggatcaccaccaccaaa |
33620258 |
T |
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| Q |
317 |
gctaacatgattaacggtttcat |
339 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
33620257 |
gctaacatgattaacggtttcat |
33620235 |
T |
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