View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14674_low_19 (Length: 278)
Name: NF14674_low_19
Description: NF14674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14674_low_19 |
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| [»] scaffold0022 (2 HSPs) |
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Alignment Details
Target: scaffold0022 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 129 - 230
Target Start/End: Original strand, 83794 - 83895
Alignment:
| Q |
129 |
aatcaaaccctattcttcctcattggcgtcatcatcatgatccttttctacctccccacaccagatccctccctcctgtgaattccaccactttcaagaa |
228 |
Q |
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| T |
83794 |
aatcaaaccctattcttcctcattggcgtcatcatcatgatccttttccacctccccacaccagatccctccctcctgtgaattccaccacattcaagaa |
83893 |
T |
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| Q |
229 |
aa |
230 |
Q |
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|| |
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| T |
83894 |
aa |
83895 |
T |
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Target: scaffold0022; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 83672 - 83756
Alignment:
| Q |
13 |
cataggaaaaatgaagaattcttacgacgaacagaagctaagagatgaagtaatctatcttcattatctttggcaacaaggcccc |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
83672 |
cataggaaaaatgaagaattcttacgacgaacagaagctaagagatgaagtaatctatcttcattatctttggcaacaaggcccc |
83756 |
T |
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