View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14674_low_20 (Length: 271)
Name: NF14674_low_20
Description: NF14674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14674_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 41622952 - 41623208
Alignment:
| Q |
1 |
atccgtggccttgagaggcgaattttcttctttaccaagaaacaagaaattctcaggtttcaagtccctatgcataactcccatagtatgacaattatga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41622952 |
atccgtggccttgagaggcgaattttcttctttaccaagaaacaagaaattctcaggtttcaagtccctatgcataactcccatagtatgacaattatga |
41623051 |
T |
|
| Q |
101 |
acaaccgtaacaatctgacgacaaagattagcagcagcacgttcagagtaatgtcctttgagaataatccgatcaaaaagttcaccaccagcacaaagct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41623052 |
acaaccgtaacaatctgacgacaaagattagcagcagcacgttcagagtaatgtcctttgagaataatccgatcaaaaagttcaccaccagcacaaagct |
41623151 |
T |
|
| Q |
201 |
ccataacaaggttaacagagtgtttatcctcataagcacctttgagttcaacaatgt |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41623152 |
ccataacaaggttaacagagtgtttatcctcataagcacctttgagttcaacaatgt |
41623208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 209
Target Start/End: Complemental strand, 39940237 - 39940194
Alignment:
| Q |
166 |
aatccgatcaaaaagttcaccaccagcacaaagctccataacaa |
209 |
Q |
| |
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||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
39940237 |
aatcctatcaaaaagttcaccaccttcacaaagctccataacaa |
39940194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 32 - 257
Target Start/End: Complemental strand, 2478932 - 2478707
Alignment:
| Q |
32 |
ttaccaagaaacaagaaattctcaggtttcaagtccctatgcataactcccatagtatgacaattatgaacaaccgtaacaatctgacgacaaagattag |
131 |
Q |
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|||| ||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| || |||||||| ||||| || | || |
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| T |
2478932 |
ttactaagaaacaagaaattctcaggcttcaaatccctatgcataacacccatagtatgacaattatgaacaacagtgacaatctggcgacacagctcag |
2478833 |
T |
|
| Q |
132 |
cagcagcacgttcagagtaatgtcctttgagaataatccgatcaaaaagttcaccaccagcacaaagctccataacaaggttaacagagtgtttatcctc |
231 |
Q |
| |
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| |||||||||||||||||||| |||||| ||||||| ||||||||| ||||||||||||||||||||||| | ||| ||||| || || |||||| |
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| T |
2478832 |
ccgcagcacgttcagagtaatgacctttggatataatcctatcaaaaagctcaccaccagcacaaagctccatgataagattaaccgaatgacgatcctc |
2478733 |
T |
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| Q |
232 |
ataagcacctttgagttcaacaatgt |
257 |
Q |
| |
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|||||||||||| || |||||||||| |
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|
| T |
2478732 |
ataagcacctttaagctcaacaatgt |
2478707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 243
Target Start/End: Complemental strand, 40532210 - 40532008
Alignment:
| Q |
41 |
aacaagaaattctcaggtttcaagtccctatgcataactcccatagtatgacaattatgaacaaccgtaacaatctgacgacaaagattagcagcagcac |
140 |
Q |
| |
|
||||||||||| || |||||||| || |||||||| || |||||| ||||||| |||||||||| ||||||| || | ||||| ||| ||||| | |
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| T |
40532210 |
aacaagaaattttctggtttcaaatctctatgcatcacacccataaaatgacaaatatgaacaacattaacaatttgtctacaaattgaagctgcagctc |
40532111 |
T |
|
| Q |
141 |
gttcagagtaatgtcctttgagaataatccgatcaaaaagttcaccaccagcacaaagctccataacaaggttaacagagtgtttatcctcataagcacc |
240 |
Q |
| |
|
|||| || | ||| || |||||||| |||||||||||||||||||||||||| ||||| |||| | ||| || | |||||||||||||||||| |
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| T |
40532110 |
tttcactatactttcccttagcaataatcctgtcaaaaagttcaccaccagcacaaagttccattacaacatgaactgaatttttatcctcataagcacc |
40532011 |
T |
|
| Q |
241 |
ttt |
243 |
Q |
| |
|
||| |
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|
| T |
40532010 |
ttt |
40532008 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 243
Target Start/End: Complemental strand, 40537053 - 40536973
Alignment:
| Q |
163 |
aataatccgatcaaaaagttcaccaccagcacaaagctccataacaaggttaacagagtgtttatcctcataagcaccttt |
243 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||| |||||||||| | ||| || | || |||||||||||||||||| |
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|
| T |
40537053 |
aataatcgtatcataaagttcaccaccagcacaaagttccataacaacatgaactgaattttcatcctcataagcaccttt |
40536973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 240
Target Start/End: Original strand, 38810328 - 38810398
Alignment:
| Q |
170 |
cgatcaaaaagttcaccaccagcacaaagctccataacaaggttaacagagtgtttatcctcataagcacc |
240 |
Q |
| |
|
||||| |||||||||||||||||||| | ||||||||| | | |||||| |||||||| ||| ||||||| |
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|
| T |
38810328 |
cgatcgaaaagttcaccaccagcacacaactccataaccaaatgaacagattgtttatcttcaaaagcacc |
38810398 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 41 - 255
Target Start/End: Complemental strand, 20501530 - 20501316
Alignment:
| Q |
41 |
aacaagaaattctcaggtttcaagtccctatgcataactcccatagtatgacaattatgaacaaccgtaacaatctgacgacaaagattagcagcagcac |
140 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||||| ||||||| ||| |||||| |||||||||| | ||||| | ||||||||| |
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|
| T |
20501530 |
aacaagaaattctctggtttcagatccctatgcataactcccataaaatgacaaatattaacaacattaacaatctgtctacaaatagaagcagcagctt |
20501431 |
T |
|
| Q |
141 |
gttcagagtaatgtcctttgagaataatccgatcaaaaagttcaccaccagcacaaagctccataacaaggttaacagagtgtttatcctcataagcacc |
240 |
Q |
| |
|
|||| ||||||||||| ||| |||| ||||||||||||||||||||||||||| |||||||||| | ||| || | ||||||||||||| || |
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| T |
20501430 |
tttcactataatgtcctttagcaatgatcctatcaaaaagttcaccaccagcacaaagttccataacaacatgaactgaattcctatcctcataagctcc |
20501331 |
T |
|
| Q |
241 |
tttgagttcaacaat |
255 |
Q |
| |
|
||| | ||||||||| |
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|
| T |
20501330 |
tttaaattcaacaat |
20501316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 36384238 - 36384318
Alignment:
| Q |
130 |
agcagcagcacgttcagagtaatgtcctttgagaataatccgatcaaaaagttcaccaccagcacaaagctccataacaag |
210 |
Q |
| |
|
||||||||||||||||| ||||||||| | || ||||||||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
36384238 |
agcagcagcacgttcagtataatgtcctctagcaacaatccgatcaaaaagctcaccaccttcacaaagctccataacaag |
36384318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 21389969 - 21390013
Alignment:
| Q |
166 |
aatccgatcaaaaagttcaccaccagcacaaagctccataacaag |
210 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
21389969 |
aatccgatcaaaaagctcaccaccttcacaaagctccataacaag |
21390013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 243
Target Start/End: Complemental strand, 55168199 - 55168119
Alignment:
| Q |
163 |
aataatccgatcaaaaagttcaccaccagcacaaagctccataacaaggttaacagagtgtttatcctcataagcaccttt |
243 |
Q |
| |
|
|||||||| |||||| | ||||||||||||||||| ||||| ||||| | |||||| | |||||||| |||||||||| |
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|
| T |
55168199 |
aataatcctatcaaacaactcaccaccagcacaaagttccatcacaagatgcacagagaatctatcctcaaaagcaccttt |
55168119 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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