View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14674_low_24 (Length: 227)
Name: NF14674_low_24
Description: NF14674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14674_low_24 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 4044374 - 4044601
Alignment:
| Q |
6 |
atttagaactttatatatgtctcctaataatttattttaaaaaatagcctaaaacaaatattacttgagtt------taatttgtatattttgtcaatct |
99 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| | |
|
|
| T |
4044374 |
atttagagctttatatatgtctcataataatttattttaaaaaatagcctaaaacaaatattacttgagtttaagtttaatttgtatattttatcaatgt |
4044473 |
T |
|
| Q |
100 |
acaattatcttacacatgtattcaattatgtggttctacatcaattaatgactgtgactgttcattgttttcatattcaataattgacgtaacaaaacac |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4044474 |
acaattatcttacacatgtattcaattatgtggtgctacatcaattaatgactctaacagttcattgttttcatattcaataattgacgtaacaaaacat |
4044573 |
T |
|
| Q |
200 |
tactccctccggttctatatataagaaa |
227 |
Q |
| |
|
|||||||| || | |||||||||||||| |
|
|
| T |
4044574 |
tactcccttcgatcctatatataagaaa |
4044601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 19117364 - 19117304
Alignment:
| Q |
71 |
tgagtttaatttgtatattttgtcaatctacaattatcttacacatgtattcaattatgtg |
131 |
Q |
| |
|
||||||||||| |||||| ||||||| ||||||||| ||||||||| || |||| ||||| |
|
|
| T |
19117364 |
tgagtttaattaatatattatgtcaatgtacaattattttacacatgcatccaataatgtg |
19117304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University