View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14674_low_4 (Length: 473)
Name: NF14674_low_4
Description: NF14674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14674_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 12944422 - 12944784
Alignment:
| Q |
1 |
ataaaatctccaagtattatctaacagatacatcttaaaagaacgatttgaagagtgtctcactctgataat-----ttactataaaaatcattgttctt |
95 |
Q |
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| T |
12944422 |
ataaaatctccaagtattatctaacagatacatcttaaaagaacggtttgaagagtttctcactctgataatttaatttactataaaaatcattgttctt |
12944521 |
T |
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| Q |
96 |
gttgtgtcttaagcttgtaagagttgcccaatgttcataggtgaaatgtcattgctatcaccgtgtaacatacgctttgcaatgacaacattggcagcat |
195 |
Q |
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| T |
12944522 |
gttgtgtcttaagcttgtaagagttgcccaatgttcataggtgaaatgtcattgctatcaccgtgtaacatacgctttgcaatgaaaacattggcagcat |
12944621 |
T |
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| Q |
196 |
cactgggatggaaagtatcccaaaaaatgtacttggatcgatcttcacaaacttttgaaacacccgtacaagtgaccaatcctccatatcgacctgcttg |
295 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12944622 |
cactgggatggaaagtatcccaaaaaatgtacttcgatcgatcttcacaaacttttgaaacacccgtacaagtgaccaatcctccatatcgacctgcttg |
12944721 |
T |
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| Q |
296 |
atgacaacatgcggaactcggattttcaaatcctaaaccacaaagagaaaaaattcattgatt |
358 |
Q |
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| T |
12944722 |
atgacaacatgcggaactcggattttcaaatcctaaaccacaaagagaaaaaattcattgatt |
12944784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 358 - 464
Target Start/End: Original strand, 12944837 - 12944943
Alignment:
| Q |
358 |
tttcaaacaaaagaaacgtggtaaacgaaaatgattaatgttaccatatttttgataattcttgatcatatcttgagtaatgtggtaagcatctgcataa |
457 |
Q |
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| T |
12944837 |
tttcaaacaaaagaaacgtggtaaacgaaaatgatgaatgttaccatattttttataattcttgatcatatcttgagtaatgtcgtaagcatctgcataa |
12944936 |
T |
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| Q |
458 |
agaatta |
464 |
Q |
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||||||| |
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| T |
12944937 |
agaatta |
12944943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 12938908 - 12938991
Alignment:
| Q |
171 |
tttgcaatgacaacattggcagcatcactgggatggaaagtatcccaaaaaatgtacttggatcgatcttcacaaacttttgaa |
254 |
Q |
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|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
12938908 |
tttgcaataataacattggcagcatcactgggatggaaagtatcccaaaaaatgtacttagatcgatcttcacaaacttttgaa |
12938991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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