View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14674_low_5 (Length: 461)
Name: NF14674_low_5
Description: NF14674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14674_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 171 - 444
Target Start/End: Complemental strand, 7724956 - 7724684
Alignment:
| Q |
171 |
tacattatacagagacatatacatcaacaatctatcaaccattttgtgtataagtaagcataggggactagactaatatggtagtcgatcccttatgact |
270 |
Q |
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| T |
7724956 |
tacattatacagagacatatacatcaacaatctatcaaccattttgtgtataagtaagcataggggactagactaatatggtagtcgatccct-atgact |
7724858 |
T |
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| Q |
271 |
gtaagaattattttagacctttctttatgtgatggactatttggcgtcgtcatgaagtttttctttttgttggggacttaattaggatttaggggtgcta |
370 |
Q |
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| T |
7724857 |
gtaagaattattttagacctttctttatgtgatggactatttggggtcgtcatgaagtttttctttttgttggggacttaattaggatttaggggtgcta |
7724758 |
T |
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| Q |
371 |
ctctaaaaagttacacaatttgttgattttgttttgttaatacgtaagacatgctaattttgatgcttaactac |
444 |
Q |
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| T |
7724757 |
ctctaaaaagttacacaatttgttgattttgttttgttaatacgtaagacatgctaattttgatgcttaactac |
7724684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 7725269 - 7725096
Alignment:
| Q |
1 |
gagtgataagaaggatgaacggatttgggcttacaaaggaaggtatttgtgtctttttggaaatggggtaaataacctagcaaataatttaattcaaaat |
100 |
Q |
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| T |
7725269 |
gagtgaaaaggaggatgaacggatttgggcttacaaaggaaggtatttgtgtctttttggaaatggggtaaataacctagcaaataatttaattcaaaat |
7725170 |
T |
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| Q |
101 |
aacctatcaaatagtttgatccaatttcttacacatcatcaatattttacacgtgaaaattactaacttataca |
174 |
Q |
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| T |
7725169 |
aacctatcaaatagtttgatccaatttcttacacatcatcaatattttacacgtgaaaattactaacttataca |
7725096 |
T |
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