View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14674_low_7 (Length: 443)
Name: NF14674_low_7
Description: NF14674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14674_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 6e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 185 - 426
Target Start/End: Complemental strand, 1155492 - 1155249
Alignment:
| Q |
185 |
atgttttttccttt--acaacatccctaccacaccaccatcatcccataaatcactacaacaccacatgattaaatgtagaagtnnnnnnnnnnnnnnnn |
282 |
Q |
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| T |
1155492 |
atgttttttccttctcacaacatccctaccacaccaccatcatcccataaatcactacaacaccacatgattaaatgcagaagtaataaaaacctaaaaa |
1155393 |
T |
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| Q |
283 |
ngaaattcaatctgtaacttgataacaaaattgaatcgcaaaatatgtctctctcacttcaccaactctctcgcttctctattttcggtcgctaaaatat |
382 |
Q |
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| T |
1155392 |
agaaattcaatctgtaacttgataacaaaattgaatcgcaaaatatgtctctctcacttcaccaactctctcgcttctatattttccgtcgctaaaatat |
1155293 |
T |
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| Q |
383 |
atttgtatcgcttatctccatcacgatatatagccctaagaacc |
426 |
Q |
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| T |
1155292 |
atctatatcgcttatctccatcacgatatatagccctaagaacc |
1155249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 1155678 - 1155566
Alignment:
| Q |
1 |
tctagtaattcataaacttgccaagttgtatatcctccaaacagatataaaaattagggttaaatgtatttttgtcgtccgtcatttagaagaattctta |
100 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
1155678 |
tctattaattcataaacttgcaaagttgtatatcctccaaactgatataaaaattagggttaaatgtattgttgtcctccgtcatttagaagaattctta |
1155579 |
T |
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| Q |
101 |
tttatctccctta |
113 |
Q |
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| T |
1155578 |
tttatctccctta |
1155566 |
T |
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