View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14675_high_1 (Length: 522)
Name: NF14675_high_1
Description: NF14675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14675_high_1 |
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| [»] scaffold0046 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 476; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 10 - 505
Target Start/End: Complemental strand, 23458690 - 23458195
Alignment:
| Q |
10 |
attattcttgcaaaagagtgagttagtggaaagagtagaaggtttgatggaggaaaataccaagattaaaataaaactaaacatcaaagaatacattgtc |
109 |
Q |
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| T |
23458690 |
attattcttgcaaaagagtgagttagtggaaagagtagaaggtttgatggaggaaaataccaagattaaaataaaactaaacatcaaagaagacattgtc |
23458591 |
T |
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| Q |
110 |
gaaaagaaggagcttgaaactaaagatttgacggctgaaattgaagagttgaaggctaaaattgaagaattgagggatgaaattccaatgcaccacaaag |
209 |
Q |
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| T |
23458590 |
gaaaagaaggagcttgaaactaaagatttgacggctgaaattgaagagttgaaggctaaaattgaagaatcgagggatgaaattccaatgcaccacaaag |
23458491 |
T |
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| Q |
210 |
ctgggtttgataaagccctaaagaaagtttcagtttctatatctgaaattaaaccatgaccattttaattggatcggagaaaattattcatctatgtttt |
309 |
Q |
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| T |
23458490 |
ctgggtttgataaagccctaaagaaagtttcagtttctatatctgaaattaaaccatgaccattttaattggatcggagaaaattattcatctatgtttt |
23458391 |
T |
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| Q |
310 |
ggatagaaagtttaccttgatgaaaggtattgcaagggattaacgccttaaatttttgtagttgaagccttttgaactctttgtgaacttgtatgggttt |
409 |
Q |
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| T |
23458390 |
ggatagaaagtttaccttgatgaaaggtactgcaatggattaacgccttaaatttttgtagttgaagccttttgaactctttgtgaacttgtatgggttt |
23458291 |
T |
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| Q |
410 |
cattttgggatcatttgtgttttgtttttagatttgggattatatatcgtatctatgaactcctatttagtatgtttatctaattatattttcaaa |
505 |
Q |
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| T |
23458290 |
cattttgggatcctttgtgttttgtttttagatttgggattatatatcgtatctatgaactcctatttagtatgtttatctaattatattttcaaa |
23458195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 148 - 263
Target Start/End: Complemental strand, 23462431 - 23462316
Alignment:
| Q |
148 |
aattgaagagttgaaggctaaaattgaagaattgagggatgaaattccaatgcaccacaaagctgggtttgataaagccctaaagaaagtttcagtttct |
247 |
Q |
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||||||||| ||||| ||| |||||||||| ||| || |||||||||| |||| |||| |||||||||||||| || | ||| || ||| |||||| |
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| T |
23462431 |
aattgaagatttgaaagctgaaattgaagaggtgaaggctgaaattccagtgcagtacaatgctgggtttgataaggcagtcaagcaaattttagtttca |
23462332 |
T |
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| Q |
248 |
atatctgaaattaaac |
263 |
Q |
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| T |
23462331 |
atatctgaacttaaac |
23462316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 74638 - 74565
Alignment:
| Q |
149 |
attgaagagttgaaggctaaaattgaagaattgagggatgaaattccaatgcaccacaaagctgggtttgataa |
222 |
Q |
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| T |
74638 |
attgaagatttgaaagctgaaattgaagaggtgaagactgaaattccagtgcagcacaatgctgggtttgataa |
74565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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