View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14675_high_2 (Length: 438)

Name: NF14675_high_2
Description: NF14675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14675_high_2
NF14675_high_2
[»] chr5 (10 HSPs)
chr5 (45-130)||(11247291-11247376)
chr5 (46-129)||(13988347-13988430)
chr5 (45-129)||(36890475-36890559)
chr5 (45-130)||(20151473-20151558)
chr5 (56-130)||(12248382-12248457)
chr5 (56-129)||(8076364-8076438)
chr5 (53-128)||(1447748-1447822)
chr5 (62-130)||(15285434-15285503)
chr5 (56-128)||(43100208-43100281)
chr5 (64-125)||(35906101-35906163)
[»] chr1 (19 HSPs)
chr1 (45-130)||(1995051-1995136)
chr1 (47-129)||(40030887-40030969)
chr1 (45-130)||(2402923-2403008)
chr1 (45-130)||(44797465-44797550)
chr1 (46-129)||(27325626-27325710)
chr1 (45-130)||(32267463-32267548)
chr1 (18-127)||(29637211-29637320)
chr1 (45-120)||(1673468-1673543)
chr1 (53-129)||(15066019-15066096)
chr1 (56-130)||(19989346-19989420)
chr1 (56-129)||(47571562-47571636)
chr1 (62-130)||(526907-526976)
chr1 (62-129)||(13276473-13276541)
chr1 (56-127)||(29731297-29731369)
chr1 (62-130)||(39858452-39858521)
chr1 (56-127)||(48489558-48489630)
chr1 (62-128)||(46845666-46845733)
chr1 (62-129)||(40314197-40314265)
chr1 (78-130)||(49430482-49430534)
[»] chr7 (16 HSPs)
chr7 (46-130)||(46576240-46576324)
chr7 (45-130)||(30922708-30922793)
chr7 (45-129)||(33496598-33496682)
chr7 (52-124)||(48460758-48460830)
chr7 (45-127)||(52036-52118)
chr7 (45-128)||(38754897-38754980)
chr7 (56-130)||(38349457-38349532)
chr7 (48-130)||(47480012-47480095)
chr7 (56-129)||(28713786-28713860)
chr7 (62-130)||(31741148-31741217)
chr7 (56-128)||(11752706-11752781)
chr7 (58-126)||(37536317-37536386)
chr7 (58-130)||(43359083-43359156)
chr7 (61-128)||(42974395-42974462)
chr7 (88-126)||(43659258-43659296)
chr7 (62-106)||(6220185-6220230)
[»] chr8 (14 HSPs)
chr8 (46-129)||(14342186-14342269)
chr8 (45-130)||(4076767-4076852)
chr8 (45-130)||(43065903-43065988)
chr8 (45-129)||(1993638-1993722)
chr8 (56-128)||(11904962-11905035)
chr8 (48-128)||(5749029-5749109)
chr8 (56-130)||(35200665-35200740)
chr8 (55-126)||(16465610-16465681)
chr8 (56-130)||(31774836-31774910)
chr8 (55-130)||(8368370-8368445)
chr8 (62-128)||(28898100-28898167)
chr8 (58-129)||(31523512-31523582)
chr8 (56-130)||(41075594-41075668)
chr8 (62-117)||(2599636-2599692)
[»] chr2 (19 HSPs)
chr2 (45-128)||(17823678-17823761)
chr2 (46-128)||(13696965-13697047)
chr2 (45-129)||(32599247-32599331)
chr2 (45-130)||(33555360-33555445)
chr2 (45-129)||(14242523-14242607)
chr2 (45-128)||(36272661-36272744)
chr2 (45-130)||(36709190-36709275)
chr2 (48-130)||(40095365-40095446)
chr2 (48-128)||(4434592-4434672)
chr2 (56-129)||(40216518-40216592)
chr2 (90-128)||(23860198-23860236)
chr2 (45-128)||(42061237-42061313)
chr2 (62-128)||(3121715-3121782)
chr2 (84-130)||(5563071-5563117)
chr2 (64-125)||(24475714-24475776)
chr2 (62-130)||(14945734-14945803)
chr2 (53-106)||(40042472-40042525)
chr2 (53-130)||(31220668-31220746)
chr2 (62-129)||(33300086-33300154)
[»] chr4 (25 HSPs)
chr4 (49-129)||(17044105-17044185)
chr4 (45-128)||(25164471-25164554)
chr4 (45-128)||(45995895-45995978)
chr4 (46-128)||(37605691-37605773)
chr4 (46-129)||(55281308-55281391)
chr4 (45-130)||(39631008-39631093)
chr4 (52-128)||(3287185-3287262)
chr4 (45-129)||(43749193-43749277)
chr4 (53-130)||(24059133-24059210)
chr4 (45-130)||(51579679-51579764)
chr4 (69-130)||(5208425-5208486)
chr4 (80-129)||(51293081-51293130)
chr4 (53-128)||(5817380-5817455)
chr4 (56-130)||(14149958-14150033)
chr4 (56-128)||(48525435-48525508)
chr4 (53-116)||(32525034-32525097)
chr4 (53-130)||(9118513-9118591)
chr4 (56-129)||(40947103-40947176)
chr4 (53-129)||(25783908-25783984)
chr4 (56-96)||(26719936-26719976)
chr4 (69-124)||(53456316-53456371)
chr4 (68-129)||(42179148-42179210)
chr4 (66-130)||(22364469-22364534)
chr4 (59-130)||(14786734-14786806)
chr4 (56-99)||(41277327-41277371)
[»] chr6 (9 HSPs)
chr6 (45-128)||(34792651-34792734)
chr6 (48-129)||(9045934-9046015)
chr6 (46-130)||(14313985-14314068)
chr6 (45-130)||(1244554-1244639)
chr6 (53-130)||(9521810-9521887)
chr6 (56-128)||(16718106-16718179)
chr6 (56-130)||(12748321-12748396)
chr6 (62-130)||(23916077-23916146)
chr6 (56-128)||(32720468-32720541)
[»] chr3 (13 HSPs)
chr3 (332-426)||(30203447-30203541)
chr3 (45-128)||(48034808-48034891)
chr3 (46-128)||(38247898-38247979)
chr3 (18-126)||(12224006-12224113)
chr3 (45-128)||(50989302-50989385)
chr3 (45-128)||(51092434-51092517)
chr3 (45-126)||(8496806-8496887)
chr3 (45-130)||(9271211-9271296)
chr3 (53-130)||(54713631-54713708)
chr3 (58-129)||(46135636-46135708)
chr3 (62-129)||(23004870-23004938)
chr3 (59-128)||(40725959-40726029)
chr3 (56-128)||(36674519-36674592)
[»] scaffold0533 (1 HSPs)
scaffold0533 (18-128)||(10232-10341)
[»] scaffold0933 (1 HSPs)
scaffold0933 (50-130)||(3054-3134)
[»] scaffold0005 (1 HSPs)
scaffold0005 (59-130)||(52924-52996)


Alignment Details
Target: chr5 (Bit Score: 86; Significance: 6e-41; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 11247291 - 11247376
Alignment:
Q  45 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11247291 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 11247376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 46 - 129
Target Start/End: Original strand, 13988347 - 13988430
Alignment:
Q  46 tcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13988347 tcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 13988430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 36890475 - 36890559
Alignment:
Q  45 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 129  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36890475 ctcacatgtattgtctctcatacactctcacatcgagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 36890559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 20151473 - 20151558
Alignment:
Q  45 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    ||||||| ||||||||||||||||||||||||||| |||||| ||||| |||||||||||||  |||||||||||| |||||||||    
T  20151473 ctcacatttattgtctctcacacactctcacatggggtggtataatgtatgtatggaaaaaaaggtgtacatgaaatattatcctt 20151558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 56 - 130
Target Start/End: Original strand, 12248382 - 12248457
Alignment:
Q  56 tgtctctcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    ||||||||| ||||| ||||||||| |||||||||||||||||| || ||||| |||| |||||||||||||||||    
T  12248382 tgtctctcaaacactatcacatggaagtggtacaatgtgtgtatagagaaaagggtgttcatgaaacattatcctt 12248457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 56 - 129
Target Start/End: Original strand, 8076364 - 8076438
Alignment:
Q  56 tgtctctcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 129  Q
    ||||||||| ||||||||||||||| |||||||||||| ||||| || ||||| |||| ||||||||||||||||    
T  8076364 tgtctctcaaacactctcacatggaagtggtacaatgtatgtatagagaaaagggtgttcatgaaacattatcct 8076438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 1447822 - 1447748
Alignment:
Q  53 tattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 128  Q
    |||||||||||| |||||||||||| |  |||||||| |||||||| |||||||| |||| |||||||||||||||    
T  1447822 tattgtctctcatacactctcacattggatggtacaacgtgtgtatagaaaaaag-gtgttcatgaaacattatcc 1447748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 15285434 - 15285503
Alignment:
Q  62 tcacacactctcacatgg-agtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    |||||||||||||||||| |||||||||  ||||||||| | ||||| |||| |||||||||||||||||    
T  15285434 tcacacactctcacatgggagtggtacatagtgtgtatgcagaaaagggtgttcatgaaacattatcctt 15285503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 43100281 - 43100208
Alignment:
Q  56 tgtctctcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 128  Q
    ||||||||| ||||| ||||||| | |||||||||||||||||| || ||||| |||| |||||||||||||||    
T  43100281 tgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaagggtgttcatgaaacattatcc 43100208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 35906101 - 35906163
Alignment:
Q  64 acacactctcacatg-gagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacatta 125  Q
    ||||||||||||||| ||||||||||  || |||||||| ||||| |||| ||||||||||||    
T  35906101 acacactctcacatgagagtggtacatagtatgtatggagaaaagggtgttcatgaaacatta 35906163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 6e-41; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 1995051 - 1995136
Alignment:
Q  45 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1995051 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 1995136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 47 - 129
Target Start/End: Original strand, 40030887 - 40030969
Alignment:
Q  47 cacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40030887 cacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatgaaaaaaagtgtgtacatgaaacattatcct 40030969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 2403008 - 2402923
Alignment:
Q  45 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2403008 ctcacatgtattgtctctcgcacactctcacatggaatggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 2402923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 44797550 - 44797465
Alignment:
Q  45 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44797550 ctcacatgtattgtctctcacacactctcacatgaagtggtacaatgtgtgtatagaaaaaagtgtgtacatgaaacattatcctt 44797465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 46 - 129
Target Start/End: Complemental strand, 27325710 - 27325626
Alignment:
Q  46 tcacatgtattgtctctcacacactct-cacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 129  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27325710 tcacatgtattgtctctcacacactcttcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 27325626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 32267548 - 32267463
Alignment:
Q  45 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  32267548 ctcacatgtattggctctcacacactctcacatggagtagtacaatgtgtgtatggaaaaaagtgtgtacatgaaatattatcctt 32267463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 29637320 - 29637211
Alignment:
Q  18 cttgtggtcctctcacacacnnnnnnnctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatg 117  Q
    |||||||||||| |||||||       |||| |||||||||||||| |||||||||| |||  ||||||||||||||||||| |||||||||||||||||    
T  29637320 cttgtggtcctcccacacacaaaaaaactcatatgtattgtctctctcacactctcatatgtggtggtacaatgtgtgtatgaaaaaaagtgtgtacatg 29637221  T
Q  118 aaacattatc 127  Q
    ||||||||||    
T  29637220 aaacattatc 29637211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 1673468 - 1673543
Alignment:
Q  45 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaa 120  Q
    |||| ||||||||||||||| ||||||| ||||| | |||||||||||||||||||||||||||||||||||||||    
T  1673468 ctcatatgtattgtctctcatacactcttacatgaaatggtacaatgtgtgtatggaaaaaagtgtgtacatgaaa 1673543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 53 - 129
Target Start/End: Complemental strand, 15066096 - 15066019
Alignment:
Q  53 tattgtctctcacacactctcacatg-gagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 129  Q
    |||||||||||||||||||||||||| |||||||||| ||| |||||||||||||| |||| ||||||||||||||||    
T  15066096 tattgtctctcacacactctcacatgagagtggtacattgtatgtatggaaaaaagagtgttcatgaaacattatcct 15066019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 56 - 130
Target Start/End: Original strand, 19989346 - 19989420
Alignment:
Q  56 tgtctctcacacactctcacatg-gagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    ||||||||||||||||||||||| |||||||||||||||||||| || ||||| ||||  ||||||||||||||||    
T  19989346 tgtctctcacacactctcacatgagagtggtacaatgtgtgtat-gagaaaagagtgtctatgaaacattatcctt 19989420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 47571636 - 47571562
Alignment:
Q  56 tgtctctcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 129  Q
    ||||||||| ||||||||||||||| |||||||||||||||||| ||  |||| |||| ||||||||||||||||    
T  47571636 tgtctctcaaacactctcacatggaagtggtacaatgtgtgtatagaggaaagggtgttcatgaaacattatcct 47571562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 526976 - 526907
Alignment:
Q  62 tcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    ||||||||||||||||||| ||||||||  ||||||||||| ||||| |||| |||||||||||||||||    
T  526976 tcacacactctcacatggaagtggtacatagtgtgtatggagaaaagggtgttcatgaaacattatcctt 526907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 62 - 129
Target Start/End: Complemental strand, 13276541 - 13276473
Alignment:
Q  62 tcacacactctcacatgg-agtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 129  Q
    |||||||||||||||||| |||||||||  ||||||||||| ||||| |||| ||||||||||||||||    
T  13276541 tcacacactctcacatgggagtggtacatagtgtgtatggagaaaagggtgttcatgaaacattatcct 13276473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 127
Target Start/End: Original strand, 29731297 - 29731369
Alignment:
Q  56 tgtctctcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatc 127  Q
    ||||||||| ||||||||||||||| ||| |||||||||||||| || ||||| |||| ||||||||||||||    
T  29731297 tgtctctcaaacactctcacatggaagtgatacaatgtgtgtatagagaaaagggtgttcatgaaacattatc 29731369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 39858452 - 39858521
Alignment:
Q  62 tcacacactctcacatgg-agtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    |||||| |||||| |||| |||||||||  ||||||||||| ||||| |||| |||||||||||||||||    
T  39858452 tcacactctctcatatgggagtggtacatagtgtgtatggagaaaagggtgttcatgaaacattatcctt 39858521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 127
Target Start/End: Original strand, 48489558 - 48489630
Alignment:
Q  56 tgtctctcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatc 127  Q
    ||||||||| ||||| ||||||||| |||||||||||| ||||| || ||||  |||| ||||||||||||||    
T  48489558 tgtctctcaaacactatcacatggaagtggtacaatgtatgtatagagaaaatggtgttcatgaaacattatc 48489630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 128
Target Start/End: Complemental strand, 46845733 - 46845666
Alignment:
Q  62 tcacacactctcacatgg-agtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 128  Q
    |||||||||||||||||| |||||||||   |||||||| | ||||| |||| |||||||||||||||    
T  46845733 tcacacactctcacatgggagtggtacataatgtgtatgcagaaaagggtgttcatgaaacattatcc 46845666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 129
Target Start/End: Original strand, 40314197 - 40314265
Alignment:
Q  62 tcacacactctcacatgg-agtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 129  Q
    ||||||||||||| |||| ||||||| |  || |||||||||||||  |||| ||||||||||||||||    
T  40314197 tcacacactctcatatgggagtggtatatagtatgtatggaaaaaatggtgttcatgaaacattatcct 40314265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 49430534 - 49430482
Alignment:
Q  78 ggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    |||||||||||  ||||||||||| ||||| |||| ||||||| |||||||||    
T  49430534 ggagtggtacatagtgtgtatggagaaaagagtgttcatgaaatattatcctt 49430482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 46 - 130
Target Start/End: Complemental strand, 46576324 - 46576240
Alignment:
Q  46 tcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46576324 tcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 46576240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 30922793 - 30922708
Alignment:
Q  45 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30922793 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtatgtacatgaaacattatcctt 30922708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 33496598 - 33496682
Alignment:
Q  45 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 129  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33496598 ctcatatgtattgtctctcacacactctcacatggagtggtataatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 33496682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 52 - 124
Target Start/End: Original strand, 48460758 - 48460830
Alignment:
Q  52 gtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacatt 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  48460758 gtattgtctctcacacactctcacatggagtggtacaatgtgtgtgtggaaaaaagtgtgtacataaaacatt 48460830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 45 - 127
Target Start/End: Original strand, 52036 - 52118
Alignment:
Q  45 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatc 127  Q
    |||| ||||||| |||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52036 ctcatatgtattatctctctcacactctcatatgtagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatc 52118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 38754980 - 38754897
Alignment:
Q  45 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 128  Q
    ||||||| ||||||||||||||||||||||||||| |||||| ||||| |||||||||||||  |||||||||||| |||||||    
T  38754980 ctcacatttattgtctctcacacactctcacatggggtggtataatgtatgtatggaaaaaaaggtgtacatgaaatattatcc 38754897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 56 - 130
Target Start/End: Complemental strand, 38349532 - 38349457
Alignment:
Q  56 tgtctctcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    ||||||||| ||||||||||||||| |||||||||||||||||| ||  |||| |||| |||||||||||||||||    
T  38349532 tgtctctcaaacactctcacatggaagtggtacaatgtgtgtatagaggaaagggtgttcatgaaacattatcctt 38349457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 47480095 - 47480012
Alignment:
Q  48 acatgtattgtctctcacacactctcacatggag-tggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    |||| |||||||||| |||||||||||||||| | ||||||||||||||||||||| ||||||| ||||| ||| ||| |||||    
T  47480095 acatttattgtctcttacacactctcacatgggggtggtacaatgtgtgtatggaagaaagtgtatacattaaagattgtcctt 47480012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 56 - 129
Target Start/End: Original strand, 28713786 - 28713860
Alignment:
Q  56 tgtctctcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 129  Q
    ||||||||| ||||||||||||| | |||||||||| ||||||| || ||||| |||| ||||||||||||||||    
T  28713786 tgtctctcaaacactctcacatgaaagtggtacaatatgtgtatagagaaaagggtgttcatgaaacattatcct 28713860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 31741148 - 31741217
Alignment:
Q  62 tcacacactctcacatgg-agtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    |||||||||||||||||| |||||||||  |||||||| ||||||||  ||| |||||||||||||||||    
T  31741148 tcacacactctcacatgggagtggtacatagtgtgtatagaaaaaaggatgttcatgaaacattatcctt 31741217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 11752706 - 11752781
Alignment:
Q  56 tgtctctcacacactctcacatgga---gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 128  Q
    |||||||||||||||||||||| |    ||||||||||||||||||||||||||   ||| ||||||| |||||||    
T  11752706 tgtctctcacacactctcacatagtagcgtggtacaatgtgtgtatggaaaaaaagatgtccatgaaatattatcc 11752781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 126
Target Start/End: Complemental strand, 37536386 - 37536317
Alignment:
Q  58 tctctcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattat 126  Q
    ||||||| ||||||||||||| | |||||||||||||||||| || ||||  |||| |||||||||||||    
T  37536386 tctctcaaacactctcacatgaaagtggtacaatgtgtgtatagagaaaatggtgttcatgaaacattat 37536317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 43359083 - 43359156
Alignment:
Q  58 tctctcacacactctcacatg-gagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    ||||||||||||||||||||| | ||| |||| |||||||||||| ||||  ||||  ||||||||||||||||    
T  43359083 tctctcacacactctcacatgagggtgatacattgtgtgtatggagaaaatggtgtcaatgaaacattatcctt 43359156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 128
Target Start/End: Complemental strand, 42974462 - 42974395
Alignment:
Q  61 ctcacacactctcacatgg-agtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 128  Q
    |||||||||||| |||||| |||| ||||||||||||||||||| ||  |||| |||||||||||||||    
T  42974462 ctcacacactcttacatgggagtg-tacaatgtgtgtatggaaacaaaggtgttcatgaaacattatcc 42974395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 126
Target Start/End: Original strand, 43659258 - 43659296
Alignment:
Q  88 aatgtgtgtatggaaaaaagtgtgtacatgaaacattat 126  Q
    |||||||||||||||||||| |||| |||||||||||||    
T  43659258 aatgtgtgtatggaaaaaagggtgttcatgaaacattat 43659296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 6220230 - 6220185
Alignment:
Q  62 tcacacactctcacatg-gagtggtacaatgtgtgtatggaaaaaa 106  Q
    ||||||||||||||||| ||||||||||  ||||||||||||||||    
T  6220230 tcacacactctcacatgagagtggtacatagtgtgtatggaaaaaa 6220185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 9e-40; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 46 - 129
Target Start/End: Complemental strand, 14342269 - 14342186
Alignment:
Q  46 tcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14342269 tcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 14342186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 4076852 - 4076767
Alignment:
Q  45 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4076852 ctcacatgtattgtctctcacacactctcacatagagtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcctt 4076767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 43065988 - 43065903
Alignment:
Q  45 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||| |||||||||||||    
T  43065988 ctcacatgtattgtctctcacacactctcacatggaatggtacaatgtatgtatggaaaaaaatgtgtacataaaacattatcctt 43065903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 45 - 129
Target Start/End: Complemental strand, 1993722 - 1993638
Alignment:
Q  45 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 129  Q
    |||||||||||||||||||| ||||||||||||| | |||||||||||||||||| ||||||||||||||| |||||||||||||    
T  1993722 ctcacatgtattgtctctcatacactctcacatgaaatggtacaatgtgtgtatgaaaaaaagtgtgtacacgaaacattatcct 1993638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 11904962 - 11905035
Alignment:
Q  56 tgtctctcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 128  Q
    ||||||||| ||||||||||||||| |||||||||||||||||| || ||||| |||| |||||||||||||||    
T  11904962 tgtctctcaaacactctcacatggaagtggtacaatgtgtgtatagagaaaagggtgttcatgaaacattatcc 11905035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 5749109 - 5749029
Alignment:
Q  48 acatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 128  Q
    |||| ||||||||||||||||||||||||||| |||||| ||||| |||||| ||||||   ||||||||||| |||||||    
T  5749109 acatttattgtctctcacacactctcacatggggtggtataatgtatgtatgaaaaaaaagatgtacatgaaatattatcc 5749029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 56 - 130
Target Start/End: Original strand, 35200665 - 35200740
Alignment:
Q  56 tgtctctcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    ||||||||| ||||||||||||||| |||||||||||||||||| || ||||| |||| ||| |||||||||||||    
T  35200665 tgtctctcaaacactctcacatggaagtggtacaatgtgtgtatagagaaaagggtgttcatcaaacattatcctt 35200740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 16465681 - 16465610
Alignment:
Q  55 ttgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattat 126  Q
    |||||||||||||| ||| | |||| |||||||| ||||||||| |||||||  |||| |||||||||||||    
T  16465681 ttgtctctcacacattctgaaatggggtggtacattgtgtgtattgaaaaaaaggtgtccatgaaacattat 16465610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 130
Target Start/End: Original strand, 31774836 - 31774910
Alignment:
Q  56 tgtctctcacacactctcacatgg-agtggtacaatgtgtgtatg-gaaaaaagtgtgtacatgaaacattatcctt 130  Q
    ||||| |||||||||||||||||  |||||||||||||||||||| ||||| ||||| |||  ||||||||||||||    
T  31774836 tgtctttcacacactctcacatgatagtggtacaatgtgtgtatgagaaaatagtgtctac--gaaacattatcctt 31774910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 130
Target Start/End: Complemental strand, 8368445 - 8368370
Alignment:
Q  55 ttgtctctcacacactctcac-atggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    |||||||||||||||||| || |||| |||| ||| |||||||||||| |||| |||||  ||||||||||||||||    
T  8368445 ttgtctctcacacactcttactatgg-gtggcacattgtgtgtatggagaaaaatgtgtcaatgaaacattatcctt 8368370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 128
Target Start/End: Original strand, 28898100 - 28898167
Alignment:
Q  62 tcacacactctcacatg-gagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 128  Q
    ||||||||||||| ||| ||||||||||  ||||||||||| ||||  |||| |||||||||||||||    
T  28898100 tcacacactctcatatgagagtggtacatagtgtgtatggagaaaatggtgttcatgaaacattatcc 28898167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 31523582 - 31523512
Alignment:
Q  58 tctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 129  Q
    |||||||||||||||| |||| | ||||||||||| | |||| ||||||| |||| ||| ||||||||||||    
T  31523582 tctctcacacactctcgcatgaaatggtacaatgtatatatgaaaaaaag-gtgtccatcaaacattatcct 31523512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 130
Target Start/End: Complemental strand, 41075668 - 41075594
Alignment:
Q  56 tgtctctcacacactctcacatgg-agtggtacaatgtgtgtatg-gaaaaaagtgtgtacatgaaacattatcctt 130  Q
    ||||| |||||||||||||||||  |||||||||||||||||||| |||||  |||| |||  ||||||||||||||    
T  41075668 tgtctttcacacactctcacatgatagtggtacaatgtgtgtatgagaaaatggtgtctac--gaaacattatcctt 41075594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 2599636 - 2599692
Alignment:
Q  62 tcacacactctcacatgg-agtggtacaatgtgtgtatggaaaaaagtgtgtacatg 117  Q
    |||||||||||||||||| |||||||||  ||||||||| ||||||| |||| ||||    
T  2599636 tcacacactctcacatgggagtggtacatagtgtgtatgaaaaaaagggtgttcatg 2599692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 9e-40; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 17823678 - 17823761
Alignment:
Q  45 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17823678 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 17823761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 46 - 128
Target Start/End: Complemental strand, 13697047 - 13696965
Alignment:
Q  46 tcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13697047 tcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 13696965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 45 - 129
Target Start/End: Complemental strand, 32599331 - 32599247
Alignment:
Q  45 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 129  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32599331 ctcacatgtattgtctgtcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 32599247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 33555445 - 33555360
Alignment:
Q  45 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33555445 ctcacatgtattgtctgtcacacattctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 33555360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 45 - 129
Target Start/End: Complemental strand, 14242607 - 14242523
Alignment:
Q  45 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 129  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14242607 ctcacatgtattgcctctcagacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 14242523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 36272744 - 36272661
Alignment:
Q  45 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 128  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  36272744 ctcacatgtattgtctttcacacactctcacatggagtggtacaatgtgtatatggaaaaaagtgtgtacatgaaacattatcc 36272661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 36709275 - 36709190
Alignment:
Q  45 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    |||||||||||||||| ||||||| ||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  36709275 ctcacatgtattgtctgtcacacattctcatatggagtggtacaatgtttgtatggaaaaaaatgtgtacatgaaacattatcctt 36709190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 40095365 - 40095446
Alignment:
Q  48 acatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    |||||||||||||||||||||||||| ||| |||||||||| ||| ||||||||||||| |||||||||||||||||||||||    
T  40095365 acatgtattgtctctcacacactctcgcatagagtggtacagtgtatgtatggaaaaaa-tgtgtacatgaaacattatcctt 40095446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 4434672 - 4434592
Alignment:
Q  48 acatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 128  Q
    |||| |||||||||||||||| |||||||||  ||||||||||||||||||||||||||  |||| |||||||||||||||    
T  4434672 acatttattgtctctcacacattctcacatgaggtggtacaatgtgtgtatggaaaaaatagtgttcatgaaacattatcc 4434592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 56 - 129
Target Start/End: Original strand, 40216518 - 40216592
Alignment:
Q  56 tgtctctcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 129  Q
    ||||||||| ||||||||||||||| |||||||||||||||||| ||  |||| |||| ||||||||||||||||    
T  40216518 tgtctctcaaacactctcacatggaagtggtacaatgtgtgtatagaggaaagggtgttcatgaaacattatcct 40216592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 90 - 128
Target Start/End: Complemental strand, 23860236 - 23860198
Alignment:
Q  90 tgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 128  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23860236 tgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 23860198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 42061313 - 42061237
Alignment:
Q  45 ctcacatgtattgtctctc--acacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 128  Q
    |||||||||||||||||||  ||||||||||| ||||||||||         ||||||||||||||||||||||||||||||||||    
T  42061313 ctcacatgtattgtctctctcacacactctcatatggagtggt---------gtatggaaaaaagtgtgtacatgaaacattatcc 42061237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 128
Target Start/End: Original strand, 3121715 - 3121782
Alignment:
Q  62 tcacacactctcacatgg-agtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 128  Q
    |||||||||||||||||| |||||||||  ||||||||| | ||||| |||| |||||||||||||||    
T  3121715 tcacacactctcacatgggagtggtacatagtgtgtatgcagaaaagggtgttcatgaaacattatcc 3121782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 130
Target Start/End: Original strand, 5563071 - 5563117
Alignment:
Q  84 gtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    ||||||||||||||| ||||||| ||| ||||| |||||||||||||    
T  5563071 gtacaatgtgtgtatagaaaaaaatgtatacataaaacattatcctt 5563117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 24475776 - 24475714
Alignment:
Q  64 acacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacatta 125  Q
    |||||||||||| |||| ||||||||  ||||||||||| ||||| |||| ||||||||||||    
T  24475776 acacactctcacgtggaagtggtacatagtgtgtatggagaaaagggtgttcatgaaacatta 24475714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 14945803 - 14945734
Alignment:
Q  62 tcacacactctcacat-ggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    |||| ||||||||||| |||||||||||   |||||||| | ||||| |||| |||||||||||||||||    
T  14945803 tcacgcactctcacataggagtggtacataatgtgtatgaagaaaagggtgttcatgaaacattatcctt 14945734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 40042472 - 40042525
Alignment:
Q  53 tattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaa 106  Q
    |||||||| || ||||||||||||||  ||| |||||||| |||||||||||||    
T  40042472 tattgtctttcgcacactctcacatgaggtgatacaatgtttgtatggaaaaaa 40042525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 130
Target Start/End: Original strand, 31220668 - 31220746
Alignment:
Q  53 tattgtctctcacacactctcacatggagtggtacaatgtgtgtatgg--aaaaaagtgtgtacatgaaacattatcctt 130  Q
    ||||||| | |||||||||||| |||| | |||||||| |||||||||  | ||||| |||| |||||||||||||||||    
T  31220668 tattgtcacccacacactctcatatgggg-ggtacaatttgtgtatggcgagaaaagggtgtccatgaaacattatcctt 31220746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 129
Target Start/End: Original strand, 33300086 - 33300154
Alignment:
Q  62 tcacacactctcacatgg-agtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 129  Q
    |||||||||||||||||| |||||||||  ||||||||| | || |  |||| ||||||||||||||||    
T  33300086 tcacacactctcacatgggagtggtacatagtgtgtatgaagaatacggtgttcatgaaacattatcct 33300154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 6e-38; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 17044105 - 17044185
Alignment:
Q  49 catgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17044105 catgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 17044185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 25164554 - 25164471
Alignment:
Q  45 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  25164554 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatgcaaaaaagtgtgtacatgaaacattatcc 25164471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 45995978 - 45995895
Alignment:
Q  45 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  45995978 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaaatgtgtacatgaaacattatcc 45995895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 46 - 128
Target Start/End: Complemental strand, 37605773 - 37605691
Alignment:
Q  46 tcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 128  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37605773 tcacatgtattgtccctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 37605691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 46 - 129
Target Start/End: Original strand, 55281308 - 55281391
Alignment:
Q  46 tcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 129  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  55281308 tcacatgtattgtctctcacacattctcacatggagtggtacaatgtatgtatggaaaaaagtgtgtacatgaaacattatcct 55281391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 39631093 - 39631008
Alignment:
Q  45 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  39631093 ctcacatgtattgtctctcacacactctcacatagagtggtacaatgtgtatatggaaaaaagtatgtacatgaaacattatcctt 39631008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 3287185 - 3287262
Alignment:
Q  52 gtattgtctctcacacactctcacatggagtggtacaatgtgtgtatgg-aaaaaagtgtgtacatgaaacattatcc 128  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3287185 gtattatctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaaagtgtgtacatgaaacattatcc 3287262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 43749193 - 43749277
Alignment:
Q  45 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 129  Q
    ||||||| ||||||| |||||||||||| ||||||||||||||||| | |||||| |||||||||||||||||||||||||||||    
T  43749193 ctcacatatattgtccctcacacactcttacatggagtggtacaatatatgtatgaaaaaaagtgtgtacatgaaacattatcct 43749277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 24059210 - 24059133
Alignment:
Q  53 tattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    |||||||||| ||||||||| |||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  24059210 tattgtctcttacacactcttacatggggtggtacaatgtgtgtatggaagaaagtgtgtacataaaacattatcctt 24059133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 51579679 - 51579764
Alignment:
Q  45 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    ||||||| |||||||||| |||||||||||||||| ||||||||||||||||||| || ||||||| ||||| |||||||||||||    
T  51579679 ctcacatttattgtctcttacacactctcacatggggtggtacaatgtgtgtatgaaagaaagtgtttacataaaacattatcctt 51579764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 5208425 - 5208486
Alignment:
Q  69 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||    
T  5208425 ctctcacatggagtggtacaatatgtgtatgaaaaaaagtgtgtacataaaacattatcctt 5208486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 80 - 129
Target Start/End: Complemental strand, 51293130 - 51293081
Alignment:
Q  80 agtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 129  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  51293130 agtggtacaatgtgtgtatgaaaaaaagtgtgtacatgaaacattatcct 51293081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 5817455 - 5817380
Alignment:
Q  53 tattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 128  Q
    |||||||||  ||||||| | |||||| ||||||||||||||||||||| |||||  |||||||||||||||||||    
T  5817455 tattgtctcctacacacttttacatggggtggtacaatgtgtgtatggagaaaaggatgtacatgaaacattatcc 5817380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 56 - 130
Target Start/End: Complemental strand, 14150033 - 14149958
Alignment:
Q  56 tgtctctcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    ||||||||| ||||| ||||||||| |||||||||||||||||| || ||||| |||| |||||||||||||||||    
T  14150033 tgtctctcaaacactttcacatggaagtggtacaatgtgtgtatagagaaaagggtgttcatgaaacattatcctt 14149958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 48525435 - 48525508
Alignment:
Q  56 tgtctctcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 128  Q
    ||||||||| ||||||||||||||| |||||||||||||||||| ||  |||| |||| |||||||||||||||    
T  48525435 tgtctctcaaacactctcacatggaagtggtacaatgtgtgtatagaggaaagggtgttcatgaaacattatcc 48525508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 32525097 - 32525034
Alignment:
Q  53 tattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacat 116  Q
    |||| ||||||||||||||||| |||| ||| ||||||||||||||||||||||  ||||||||    
T  32525097 tattatctctcacacactctcatatggggtgatacaatgtgtgtatggaaaaaaaggtgtacat 32525034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 9118591 - 9118513
Alignment:
Q  53 tattgtctctcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    ||||||||||||| |||||||||||| | |||||||| ||| ||||||||  |||| |||| ||||||| |||||||||    
T  9118591 tattgtctctcacgcactctcacatgaatgtggtacattgtatgtatggaggaaagggtgttcatgaaatattatcctt 9118513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 40947176 - 40947103
Alignment:
Q  56 tgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 129  Q
    ||||||||||||||||||| ||| | ||||||||| | | |||| ||||||| |||| ||| ||||||||||||    
T  40947176 tgtctctcacacactctcatatgaaatggtacaatatttatatgaaaaaaagagtgtccataaaacattatcct 40947103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 129
Target Start/End: Complemental strand, 25783984 - 25783908
Alignment:
Q  53 tattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 129  Q
    |||||| || ||||||||||||||| |  |||||||| |||||||| |||||||   ||| ||||||||||||||||    
T  25783984 tattgtttcacacacactctcacataggatggtacaacgtgtgtatagaaaaaaagatgttcatgaaacattatcct 25783908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 26719976 - 26719936
Alignment:
Q  56 tgtctctcacacactctcacatggagtggtacaatgtgtgt 96  Q
    ||||||||||||||| |||||||| ||||||||||||||||    
T  26719976 tgtctctcacacactgtcacatggggtggtacaatgtgtgt 26719936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 124
Target Start/End: Complemental strand, 53456371 - 53456316
Alignment:
Q  69 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacatt 124  Q
    ||||||||||| ||||||||||||||| | ||||||||| || | |||||||||||    
T  53456371 ctctcacatggtgtggtacaatgtgtgcacggaaaaaagggttttcatgaaacatt 53456316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 42179210 - 42179148
Alignment:
Q  68 actctcacat-ggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 129  Q
    |||||||||| |||||||||||  ||||||||| |||||||  ||| ||||||||||||||||    
T  42179210 actctcacataggagtggtacatagtgtgtatgaaaaaaaggatgttcatgaaacattatcct 42179148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 22364534 - 22364469
Alignment:
Q  66 acactctcacatgg-agtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    |||||||||||||| |||||||||   | |||||||| ||||| |||| |||||||||||||||||    
T  22364534 acactctcacatgggagtggtacataatatgtatggagaaaagggtgttcatgaaacattatcctt 22364469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 130
Target Start/End: Complemental strand, 14786806 - 14786734
Alignment:
Q  59 ctctcacacactctcacatg-gagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    |||| ||||| ||||||||| ||||||||||   |||||||| ||||||  |||| |||||||||||||||||    
T  14786806 ctcttacacaatctcacatgagagtggtacataatgtgtatgaaaaaaatggtgtccatgaaacattatcctt 14786734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 99
Target Start/End: Original strand, 41277327 - 41277371
Alignment:
Q  56 tgtctctcacacactctcacatgg-agtggtacaatgtgtgtatg 99  Q
    ||||||||||||| |||||||||  ||||||||||||||||||||    
T  41277327 tgtctctcacacagtctcacatgatagtggtacaatgtgtgtatg 41277371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 34792734 - 34792651
Alignment:
Q  45 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34792734 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatgcaaaaaagtgtgtacatgaaacattatcc 34792651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 48 - 129
Target Start/End: Original strand, 9045934 - 9046015
Alignment:
Q  48 acatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9045934 acatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatgaaaaaaagtgtgtacatgaaacattatcct 9046015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 46 - 130
Target Start/End: Complemental strand, 14314068 - 14313985
Alignment:
Q  46 tcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14314068 tcacatgtattgtctctcacacactctcacataaagtggtacaatgtgtgtatgga-aaaagtgtgtacatgaaacattatcctt 14313985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 1244639 - 1244554
Alignment:
Q  45 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    |||||||||||||||||||  ||||||||| ||| ||| |||||||||||||||| |||||| |||||||||||||||||||||||    
T  1244639 ctcacatgtattgtctctcgaacactctcatatgaagtagtacaatgtgtgtatgaaaaaaaatgtgtacatgaaacattatcctt 1244554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 9521887 - 9521810
Alignment:
Q  53 tattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    |||||||||  ||||||| | ||||||  |||||||||||||||||||| |||||  |||||||||||||||||||||    
T  9521887 tattgtctcctacacacttttacatgggatggtacaatgtgtgtatggagaaaaggatgtacatgaaacattatcctt 9521810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 16718106 - 16718179
Alignment:
Q  56 tgtctctcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 128  Q
    ||||||||| ||||| ||||||||| |||||||||||||||||| || ||||| |||| |||||||||||||||    
T  16718106 tgtctctcaaacactatcacatggaagtggtacaatgtgtgtatagagaaaagggtgttcatgaaacattatcc 16718179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 130
Target Start/End: Original strand, 12748321 - 12748396
Alignment:
Q  56 tgtctctcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||  | ||||| ||||  ||||||||||||||||    
T  12748321 tgtctctcaaacactctcacatggaagtggtacaatgtgtgtataaagaaaagggtgtttatgaaacattatcctt 12748396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 23916077 - 23916146
Alignment:
Q  62 tcacacactctcacatgg-agtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    |||||||||||||||||| |||||||||  ||||||||| | ||||| |||| |||||||||||||||||    
T  23916077 tcacacactctcacatgggagtggtacatagtgtgtatgcagaaaagggtgttcatgaaacattatcctt 23916146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 32720468 - 32720541
Alignment:
Q  56 tgtctctcacacactctcacat-ggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 128  Q
    ||||||||||| ||| ||| || ||||||||| |||||||||||||||||||  |||| ||| || ||||||||    
T  32720468 tgtctctcacatactttcaaataggagtggtataatgtgtgtatggaaaaaaaggtgtccataaagcattatcc 32720541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 332 - 426
Target Start/End: Complemental strand, 30203541 - 30203447
Alignment:
Q  332 tagatgattgttttccatggtgtccatagataaacaaagacaagcttatggaaaacattattagacctccaattagaaaatgaatatagcaaact 426  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||| ||| |||||||||    
T  30203541 tagatgattgttttccatggtgtccatagacaaacaaagacaagcttatggaaaacattattaaaactccaattagaaaataaatgtagcaaact 30203447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 48034891 - 48034808
Alignment:
Q  45 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 128  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  48034891 ctcaaatgtattgtctctcacacactctcacatgaagtggtacaatgtgtgtatggaaaaaagtgtgtacataaaacattatcc 48034808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 46 - 128
Target Start/End: Original strand, 38247898 - 38247979
Alignment:
Q  46 tcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 128  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  38247898 tcacatgtattgtctctcacacactctcacatagagtggtacaatgtgtgtatgg-aaaaagtgtgtacatgaaacattatcc 38247979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 12224113 - 12224006
Alignment:
Q  18 cttgtggtcctctcacacacnnnnnnnctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatg 117  Q
    |||||||||| |||||||||       ||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||    
T  12224113 cttgtggtcccctcacacacaagaaaactcacatgtattgtctctcacacactctcacctgaagtggtacaa-gtgtgtatggaaaaaagtgtgtacatg 12224015  T
Q  118 aaacattat 126  Q
    |||||||||    
T  12224014 aaacattat 12224006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 50989302 - 50989385
Alignment:
Q  45 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 128  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||||  |||||| |||||||||||||||||||||    
T  50989302 ctcacatgtattgtctctcacacactctcacatgaagtggtataatgtgtgtataaaaaaaaatgtgtacatgaaacattatcc 50989385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 51092434 - 51092517
Alignment:
Q  45 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 128  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||||  |||||| |||||||||||||||||||||    
T  51092434 ctcacatgtattgtctctcacacactctcacatgaagtggtataatgtgtgtataaaaaaaaatgtgtacatgaaacattatcc 51092517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 45 - 126
Target Start/End: Original strand, 8496806 - 8496887
Alignment:
Q  45 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattat 126  Q
    |||| ||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||    
T  8496806 ctcatatgtattgtctctcacatactctcacatggagtggtagaatgtgtgtatgaaaaaaagtgtgtgcatgaaacattat 8496887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 9271211 - 9271296
Alignment:
Q  45 ctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    ||||||||||||||| |||||||||||| ||||| ||||||||||| | |||||| ||||||||||||||||||||||||||||||    
T  9271211 ctcacatgtattgtccctcacacactcttacatgaagtggtacaatatatgtatgaaaaaaagtgtgtacatgaaacattatcctt 9271296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 53 - 130
Target Start/End: Original strand, 54713631 - 54713708
Alignment:
Q  53 tattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    ||||||||||||||||||||||||||| ||  || ||||| ||| |||||||||| |||||||||||| |||||||||    
T  54713631 tattgtctctcacacactctcacatggggttatataatgtatgtgtggaaaaaagggtgtacatgaaatattatcctt 54713708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 46135636 - 46135708
Alignment:
Q  58 tctctcacacactctcacat-ggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 129  Q
    |||||||||||||||||||| || ||||||||||||||||||||| ||||   ||| ||||||||||||||||    
T  46135636 tctctcacacactctcacataggggtggtacaatgtgtgtatggagaaaatgatgttcatgaaacattatcct 46135708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 129
Target Start/End: Original strand, 23004870 - 23004938
Alignment:
Q  62 tcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 129  Q
    ||||||||||||||||||| ||||| ||  ||||||||||| ||||| |||| ||||||||||||||||    
T  23004870 tcacacactctcacatggaagtggtgcatagtgtgtatggagaaaagggtgttcatgaaacattatcct 23004938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 40725959 - 40726029
Alignment:
Q  59 ctctcacacactctcacat-ggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 128  Q
    |||||||||| |||||||| |||||| ||||  ||||||||| |||||| ||||| |||||||||||||||    
T  40725959 ctctcacacattctcacataggagtgatacatagtgtgtatgaaaaaaaatgtgtccatgaaacattatcc 40726029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 36674592 - 36674519
Alignment:
Q  56 tgtctctcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 128  Q
    ||||||||| ||||||||| ||||| |||||||||||||||||| || |||||  ||| |||||||||| ||||    
T  36674592 tgtctctcaaacactctcatatggaagtggtacaatgtgtgtatagagaaaaggatgttcatgaaacataatcc 36674519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0533 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 10341 - 10232
Alignment:
Q  18 cttgtggtcctctcacacacnnnnnnnctcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatg 117  Q
    ||||||||||||||||||||       |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  10341 cttgtggtcctctcacacacaaaaaaactcacatgtattgtctctcacatactctcacatggagtggtacaatgtgtgtatgga-aaaagtgcgtacatg 10243  T
Q  118 aaacattatcc 128  Q
    |||||||||||    
T  10242 aaacattatcc 10232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0933 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 3134 - 3054
Alignment:
Q  50 atgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3134 atgtattgtctctcatacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtatatgaaacattatcctt 3054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 130
Target Start/End: Original strand, 52924 - 52996
Alignment:
Q  59 ctctcacacactctcacatg-gagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctt 130  Q
    |||| ||||| ||||||||| ||||||||||   |||||||| ||||||  |||| |||||||||||||||||    
T  52924 ctcttacacaatctcacatgagagtggtacataatgtgtatgaaaaaaatggtgtccatgaaacattatcctt 52996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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