View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14675_low_4 (Length: 282)

Name: NF14675_low_4
Description: NF14675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14675_low_4
NF14675_low_4
[»] chr7 (4 HSPs)
chr7 (1-267)||(354343-354609)
chr7 (1-261)||(10580726-10580980)
chr7 (17-208)||(10575342-10575532)
chr7 (133-205)||(39954885-39954957)
[»] chr3 (7 HSPs)
chr3 (16-209)||(21584633-21584825)
chr3 (2-205)||(25084978-25085180)
chr3 (2-205)||(24923500-24923702)
chr3 (35-205)||(24497299-24497468)
chr3 (35-205)||(31825597-31825766)
chr3 (35-202)||(24919929-24920095)
chr3 (35-205)||(24982019-24982188)
[»] chr8 (1 HSPs)
chr8 (17-209)||(14261068-14261259)
[»] chr2 (1 HSPs)
chr2 (16-209)||(41027526-41027718)
[»] chr4 (2 HSPs)
chr4 (17-209)||(22898508-22898699)
chr4 (17-209)||(22950176-22950367)


Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-147; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 354343 - 354609
Alignment:
Q  1 caaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  354343 caaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatga 354442  T
Q  101 ggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  354443 ggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcatgcaaggaggaagactctgactgctatggat 354542  T
Q  201 gttgtttatcagggaagaaccctctacagttttggtggatgaagaagatgaagatttgttatgttgt 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  354543 gttgtttatcagggaagaaccctctacagttttggtggatgaagaagatgaagatttgttatgttgt 354609  T

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Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 10580726 - 10580980
Alignment:
Q  1 caaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||    
T  10580726 caaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagagttggtgtgaagaggatcagtgg-tttgatctatga 10580824  T
Q  101 ggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggat 200  Q
    ||||||||||||| ||||||||||||||||||||||| |||||  |||||||||||||||||||||||     | |||||||||||||||||||||||||    
T  10580825 ggaaataagaggactgttgaagattttcttgcagaataagattcttgatgctgttacttacactgagc-----atgaggaagactctgactgctatggat 10580919  T
Q  201 gttgtttatcagggaagaaccctctacagttttggtggatgaagaagatgaagatttgtta 261  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  10580920 gttgtttatcagggaagaaccctctatggttttggtggatgaagaagatgaagatttgtta 10580980  T

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Target: chr7; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 10575342 - 10575532
Alignment:
Q  17 aacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtg 116  Q
    ||||| |||||||| |||||||||||||||||| |||||||||||||||| |||||||| || ||||||||  || ||||||||||||| |||||| |||    
T  10575342 aacatccaaggaatcacaaagccagcgattcgtcgattggcgagaagaggaggtgtgaaaagaatcagtgg-attgatctatgaggaaacaagaggtgtg 10575440  T
Q  117 ttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgttta 208  Q
    |||||||| |||||| ||||||  ||  | |||||||||||||||||||||| ||| |||||||| ||| ||||||||||||||||||||||    
T  10575441 ttgaagatcttcttggagaatgttataagagatgctgttacttacactgagcatgcgaggaggaaaactgtgactgctatggatgttgttta 10575532  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 205
Target Start/End: Complemental strand, 39954957 - 39954885
Alignment:
Q  133 agaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgt 205  Q
    |||||| |||| |||||||||||||||||||||||| ||| |||||||| ||| | || || |||||||||||    
T  39954957 agaatgtgattcgtgatgctgttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgt 39954885  T

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Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 21584825 - 21584633
Alignment:
Q  16 taacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagt 115  Q
    ||||||||| ||||| || ||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||| | | |||||||||| |||||||||    
T  21584825 taacattcagggaatcaccaagccagcgattcgtcgattggcgagaagaggtggtgttaagagaatcagtggtttgatt-tatgaggaaacaagaggagt 21584727  T
Q  116 gttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgtttat 209  Q
      | |||||||||||| |||||| |||| ||||||| ||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  21584726 tcttaagattttcttggagaatgtgattcgtgatgcggttacgtacactgagcatgcaaggaggaagactgtgactgctatggatgttgtttat 21584633  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 2 - 205
Target Start/End: Original strand, 25084978 - 25085180
Alignment:
Q  2 aaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgag 101  Q
    ||||||||| | | |||||| || || || || ||||| || ||||||||||||||||||||||||||||||||||| |||||||| ||| || |||||     
T  25084978 aaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtagattggcgagaagaggtggtgtgaagagaatcagtgg-tttgatatatgaa 25085076  T
Q  102 gaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatg 201  Q
    ||||  ||||| || |||||||| |||||| |||||| |||  ||||||| ||||| ||||||||||  ||||||||||||||| |||| || |||||||    
T  25085077 gaaaccagaggtgtcttgaagatcttcttggagaatgtgatccgtgatgcagttacatacactgagcacgcaaggaggaagactgtgacagccatggatg 25085176  T
Q  202 ttgt 205  Q
    ||||    
T  25085177 ttgt 25085180  T

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Target: chr3; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 2 - 205
Target Start/End: Complemental strand, 24923702 - 24923500
Alignment:
Q  2 aaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgag 101  Q
    ||||||||| | | |||||| || || || || ||||| || |||||| ||||||| |||||||||||||| ||||| ||||||||||| | |||||||     
T  24923702 aaggttcttcgtgataacatccagggtatcaccaagcctgctattcgtcgattggcaagaagaggtggtgttaagagaatcagtggtttga-tctatgaa 24923604  T
Q  102 gaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatg 201  Q
    ||||  ||||| || |||||||| |||||| ||||||  ||| |||||||||| || ||||||||||  ||||||||||||||  |||| || |||||||    
T  24923603 gaaaccagaggtgtcttgaagatcttcttggagaatgtcattcgtgatgctgtgacatacactgagcacgcaaggaggaagacagtgacagccatggatg 24923504  T
Q  202 ttgt 205  Q
    ||||    
T  24923503 ttgt 24923500  T

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Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 35 - 205
Target Start/End: Complemental strand, 24497468 - 24497299
Alignment:
Q  35 aagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcag 134  Q
    ||||| || |||||| ||||||| |||||||||||||| ||||| |||||||| || | ||||||| ||||  ||||| || |||||||| |||||| |     
T  24497468 aagcctgctattcgtcgattggcaagaagaggtggtgttaagagaatcagtggattga-tctatgaagaaaccagaggtgtcttgaagatcttcttggaa 24497370  T
Q  135 aatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgt 205  Q
    |||| |||  ||||||| ||||| ||||||||||  ||||||||||||||| |||| || |||||||||||    
T  24497369 aatgtgatccgtgatgcagttacatacactgagcacgcaaggaggaagactgtgacagccatggatgttgt 24497299  T

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Target: chr3; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 35 - 205
Target Start/End: Complemental strand, 31825766 - 31825597
Alignment:
Q  35 aagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcag 134  Q
    ||||| || |||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||  ||||| || |||||||| |||||| ||    
T  31825766 aagcctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtgg-tttgatctatgaagaaactagaggtgtcttgaagatcttcttggag 31825668  T
Q  135 aatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgt 205  Q
    ||||  ||  ||||||| || || ||||||||||  || |||||||||||  | || || |||||||||||    
T  31825667 aatgtcatccgtgatgcggtcacatacactgagcacgctaggaggaagacagttaccgcgatggatgttgt 31825597  T

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Target: chr3; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 35 - 202
Target Start/End: Complemental strand, 24920095 - 24919929
Alignment:
Q  35 aagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcag 134  Q
    ||||| || |||||| ||||||| |||||||||||||||||||| ||||| || ||| |||||||| ||||  ||||| || |||||||| |||||  ||    
T  24920095 aagcctgcaattcgtcgattggcaagaagaggtggtgtgaagagaatcagcgg-tttgatctatgaagaaaccagaggtgtcttgaagatcttcttagag 24919997  T
Q  135 aatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgt 202  Q
    ||||  ||| |||||||||| || ||||||||||  || |||||||||||  |||| || ||||||||    
T  24919996 aatgtcattcgtgatgctgtgacatacactgagcacgctaggaggaagacagtgacagccatggatgt 24919929  T

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Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 35 - 205
Target Start/End: Original strand, 24982019 - 24982188
Alignment:
Q  35 aagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcag 134  Q
    ||||| || |||||| ||||||| |||||||||||||| ||||| |||||||| ||| || ||||| ||||  ||||| || |||||||| |||||| ||    
T  24982019 aagcctgctattcgtcgattggcaagaagaggtggtgttaagagaatcagtgg-tttgatatatgaagaaaccagaggtgtcttgaagatcttcttggag 24982117  T
Q  135 aatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgt 205  Q
    ||||  ||  ||||||| ||||| ||||||||||  || |||||||||||| | || || |||||||||||    
T  24982118 aatgtcatccgtgatgcagttacatacactgagcacgctaggaggaagactgttaccgccatggatgttgt 24982188  T

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Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 14261259 - 14261068
Alignment:
Q  17 aacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtg 116  Q
    ||||| |||||||| |||||||||||||||||  |||| ||||||||||| ||||||||||| ||||| || || | | ||||| ||||   | || |||    
T  14261259 aacatccaaggaatcacaaagccagcgattcggcgattagcgagaagaggaggtgtgaagagaatcagcgggttgatt-tatgaagaaactcgcggtgtg 14261161  T
Q  117 ttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgtttat 209  Q
    ||||||||||||||| |||||| |||  | ||||||||||| || ||||| | ||| |||||||||||  | |||||||||||||||||||||    
T  14261160 ttgaagattttcttggagaatgtgataagagatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttat 14261068  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 41027526 - 41027718
Alignment:
Q  16 taacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagt 115  Q
    ||||||||||||||| || ||||| ||||||||| | |||||  | ||||| || |||||| | || || ||||| | |||| || || | | | || ||    
T  41027526 taacattcaaggaattacgaagcctgcgattcgtcgtttggcacgtagaggaggagtgaagcgtataagcggtttga-tctacgaagagacacgtggcgt 41027624  T
Q  116 gttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgtttat 209  Q
    ||||||||| || ||| ||||||  ||| ||||||||||||||||||| ||||  || ||||| |||||| | |||||||||||||||||||||    
T  41027625 gttgaagatctttttggagaatgttattcgtgatgctgttacttacacagagcacgctaggagaaagactgttactgctatggatgttgtttat 41027718  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 22898508 - 22898699
Alignment:
Q  17 aacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtg 116  Q
    ||||| || |||||||||||||||||||||||| |  | ||  | ||||| || |||||| | ||||||||||| | | |||||||| | | | || |||    
T  22898508 aacatccagggaataacaaagccagcgattcgtcgtcttgctcgtagaggaggagtgaagcgtatcagtggtttgatt-tatgaggagacacgtggcgtg 22898606  T
Q  117 ttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgtttat 209  Q
    |||||||| || ||| |||||| |||| | |||||||| |||||||||||||  || || ||||||||  | |||||||||||||| ||||||    
T  22898607 ttgaagatatttttggagaatgtgattagagatgctgtgacttacactgagcacgctagaaggaagacggttactgctatggatgtggtttat 22898699  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 22950176 - 22950367
Alignment:
Q  17 aacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtg 116  Q
    ||||| || |||||||||||||||||||||||| |  | ||  | ||||| || |||||| | ||||||||||| | | |||||||| | | | || |||    
T  22950176 aacatccagggaataacaaagccagcgattcgtcgtcttgctcgtagaggaggagtgaagcgtatcagtggtttgatt-tatgaggagacacgtggcgtg 22950274  T
Q  117 ttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgtttat 209  Q
    |||||||| || ||| |||||| |||| | |||||||| |||||||||||||  || || ||||||||  | |||||||||||||| ||||||    
T  22950275 ttgaagatatttttggagaatgtgattagagatgctgtgacttacactgagcacgctagaaggaagacggttactgctatggatgtggtttat 22950367  T

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