View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14675_low_7 (Length: 205)
Name: NF14675_low_7
Description: NF14675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14675_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 31707333 - 31707509
Alignment:
| Q |
14 |
aaatgaatgaagaaaattctacctgtggcagctgcagcagttagagtagtgatatcatcatgagatttgacattaacagcagaactaacaacagaagcaa |
113 |
Q |
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| T |
31707333 |
aaatgaatgaagaaaattctacctgtggcagctgcagcagttagagtagtgatatcatcatgagatttgacattaacagcagaactaacaacagaagcaa |
31707432 |
T |
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| Q |
114 |
ggtgttctctctcagctcccattgcttcagcagcttcaacacattgagcagcaataagtgttgctgcagaagccaca |
190 |
Q |
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| T |
31707433 |
ggtgttctctctcagctcccattgcttcagcagcttcaacacattgagcagcaataagtgttgctgcagaagccaca |
31707509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 8e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 33 - 159
Target Start/End: Complemental strand, 38268740 - 38268614
Alignment:
| Q |
33 |
tacctgtggcagctgcagcagttagagtagtgatatcatcatgagatttgacattaacagcagaactaacaacagaagcaaggtgttctctctcagctcc |
132 |
Q |
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| T |
38268740 |
tacctgtggcagctgcagcagtaagagtagtgatatcatcatgagaacgaacattcacagctgagctgaccaccgatgcaaggtggtcgcgctcagctcc |
38268641 |
T |
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| Q |
133 |
cattgcttcagcagcttcaacacattg |
159 |
Q |
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| T |
38268640 |
cattgcttcggcagcctccacacattg |
38268614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 38307347 - 38307306
Alignment:
| Q |
36 |
ctgtggcagctgcagcagttagagtagtgatatcatcatgag |
77 |
Q |
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| T |
38307347 |
ctgtggcagctgtagcagtaagagtagtgatatcatcatgag |
38307306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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