View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14676_low_1 (Length: 604)
Name: NF14676_low_1
Description: NF14676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14676_low_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 13 - 604
Target Start/End: Original strand, 34434806 - 34435397
Alignment:
| Q |
13 |
tttctcacttcatcatcgtatactcttgccctaagtgcaccaaagaaatctgtaaaaaataagagagttgagccaacagtcgatttgtcgggtccaaatt |
112 |
Q |
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| T |
34434806 |
tttctcacttcatcatcatatactcttgccctaagtgcaccaaagaaatctgtaaaaaataagagagttgagccaacagtcgatttgtcgggtccaaatt |
34434905 |
T |
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| Q |
113 |
ttgaatcaaatacataattttttatgaccgaactttctcttatttataagatcgaatgaagtaattaaaaaagtttcaacattctagaagagaacttacc |
212 |
Q |
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| T |
34434906 |
ttgaatcaaatacataattttttatgaccgaactttctcttatttataagatcgaatgaagtaattaaaaaagtttcaacattctagaagagaacttacc |
34435005 |
T |
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| Q |
213 |
aatggattgaccagggaaagtgtcaacaatcttaacaacatcttcctcaggaacattatcatgtctaaaaatccctttacaaacaccaatacgatcttct |
312 |
Q |
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| T |
34435006 |
aatggattgaccagggaaagtgtcaacaatcttaacaacatcttcctcaggaacattatcatgtctaaaaatccctttacaaacaccaatacgatcttct |
34435105 |
T |
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| Q |
313 |
cttgtaggtgcccaatagaatttctccatacgaccgtcacgaataagaggagcatacaatgttgaaaaatcattaccagtaacaatgataggcacacgcg |
412 |
Q |
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| T |
34435106 |
cttgtaggtgcccaatagaatttctccatacgaccgtcacgaataagaggagcatacaatgttgaaaaatcattaccagtaacaatgataggcacacgtg |
34435205 |
T |
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| Q |
413 |
cattctcttctttgttatacataccaggaagttgaacatttgttgggttatcagcaatgttcataagtgttgcatttaccatttgattgttcactgtgta |
512 |
Q |
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| T |
34435206 |
cattctcttctttgttatacataccaggaagttgaacatttgttgggttatcagcaatgttcataagtgttgcatttaccatttgattgttcactgtgta |
34435305 |
T |
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| Q |
513 |
ctgtgttgttccacccatacgaccggctcctgcatcaagatcgtttatgaagagacaacacattttcccttttcttattatctctgatgctt |
604 |
Q |
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| T |
34435306 |
ctgtgttgttccacccatacgaccggctcctgcatcaagatcgtttatgaagagacaacacattttcccttttcttattatgtctgatgctt |
34435397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 142; Significance: 3e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 295 - 583
Target Start/End: Original strand, 30665726 - 30666015
Alignment:
| Q |
295 |
acaccaatacgatcttctcttgtaggtgcccaatagaatttctccatacgaccgtcacgaataagaggagcatacaatgttgaaaaatcattaccagtaa |
394 |
Q |
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| T |
30665726 |
acaccaatacggtcttctcttgtaggagcccagtagaatttctccatacgaccatcacggatgagaggagcataaagtgttgagaaatcgttaccggtga |
30665825 |
T |
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| Q |
395 |
caatgataggcacacgcgcattctcttctttgttatacataccaggaagttgaacatttgttgggttatcagcaatgttcataagtgttgcatttaccat |
494 |
Q |
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| T |
30665826 |
caatgatgggcacacgagcgttatcttccttgttgtacataccagggagttggacattggtggggttatcagcaatgttcatgagtgtggcattcaccat |
30665925 |
T |
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| Q |
495 |
ttgattgttcactgtgtactgtgttgttccacccatacgaccggctcctgcatcaagatcgtttatgaagagacaacacat-tttccctt |
583 |
Q |
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| T |
30665926 |
ctggttgttgacagtgtattgtgtggttccacccatacgacctgctcctgcatcgagatcgttgatgaacagacaacacatctttccctt |
30666015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 30665526 - 30665574
Alignment:
| Q |
16 |
ctcacttcatcatcgtatactcttgccctaagtgcaccaaagaaatctg |
64 |
Q |
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| T |
30665526 |
ctcacttcatcatcgtacactctagccctcaatgcaccgaagaaatctg |
30665574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 4e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 316 - 587
Target Start/End: Original strand, 6853480 - 6853751
Alignment:
| Q |
316 |
gtaggtgcccaatagaatttctccatacgaccgtcacgaataagaggagcatacaatgttgaaaaatcattaccagtaacaatgataggcacacgcgcat |
415 |
Q |
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| T |
6853480 |
gtaggtgcccagtagaatttttccatacgtccatcacgaattaaaggagcatacaacgtagagaagtcattgccagtgacgatgatagggacgcgggcat |
6853579 |
T |
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| Q |
416 |
tctcttctttgttatacataccaggaagttgaacatttgttgggttatcagcaatgttcataagtgttgcatttaccatttgattgttcactgtgtactg |
515 |
Q |
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| T |
6853580 |
tctcttctttgttgtacataccgggaagttgaacattggtagggttgtcagcaatgttcatgagggttgcatttaccatctggttgttgactgtgtattg |
6853679 |
T |
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| Q |
516 |
tgttgttccacccatacgaccggctcctgcatcaagatcgtttatgaagagacaacacattttcccttttct |
587 |
Q |
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| T |
6853680 |
agtagtgccacccattctaccagctcctgcatcaagatcattgatgaagagacagcacatctttccttttct |
6853751 |
T |
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