View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14676_low_2 (Length: 298)
Name: NF14676_low_2
Description: NF14676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14676_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 173 - 293
Target Start/End: Complemental strand, 52609857 - 52609737
Alignment:
| Q |
173 |
tcacttagaaggcaagatccacacttatatacaatatacaataaatctgaaaaatgtgattcattctccttaaatcgacaaattacatattaacataaaa |
272 |
Q |
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| T |
52609857 |
tcacttagaaggcaagatccacacttatatacaatatacaataaatctggaaaatgtgattcattctccttaaatcgacaaattacatattgacataaaa |
52609758 |
T |
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| Q |
273 |
ttcaataatcccaacctttgc |
293 |
Q |
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| T |
52609757 |
ttcaataatcccaacctttgc |
52609737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 9 - 146
Target Start/End: Complemental strand, 52610016 - 52609884
Alignment:
| Q |
9 |
ttgtaacctctcttcctttctcaaatcactcgttaccctcaaaagtaaacnnnnnnngggggaagaagaaaaacgtaccttcgatcaagaataacaacaa |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||| || |
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| T |
52610016 |
ttgtaacctctcttcctttctcaaatcactcgttaccctcaaacgtaaacaaaaaaagggggaagaagaaaaacgtaccttcaatcaagaataacaataa |
52609917 |
T |
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| Q |
109 |
tttctctataagatacaacatttacacttgaaaggttc |
146 |
Q |
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| T |
52609916 |
tttctc-----catacaacatgtacacttgaaaggttc |
52609884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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