View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14677_high_2 (Length: 453)

Name: NF14677_high_2
Description: NF14677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14677_high_2
NF14677_high_2
[»] chr4 (49 HSPs)
chr4 (16-431)||(27506683-27507098)
chr4 (16-332)||(27485780-27486098)
chr4 (16-240)||(27478814-27479038)
chr4 (16-220)||(27497273-27497477)
chr4 (16-213)||(27563304-27563501)
chr4 (16-208)||(27570012-27570204)
chr4 (57-227)||(27412690-27412860)
chr4 (16-208)||(27415609-27415798)
chr4 (16-224)||(27420393-27420601)
chr4 (16-227)||(27425797-27426008)
chr4 (17-238)||(27468260-27468481)
chr4 (17-210)||(27503908-27504101)
chr4 (60-212)||(27585717-27585869)
chr4 (16-200)||(27527146-27527326)
chr4 (16-210)||(27565912-27566106)
chr4 (17-210)||(27475540-27475733)
chr4 (17-240)||(27524510-27524733)
chr4 (57-171)||(27411456-27411570)
chr4 (17-238)||(27514877-27515098)
chr4 (28-210)||(27423219-27423401)
chr4 (17-210)||(27489946-27490139)
chr4 (16-171)||(27486968-27487123)
chr4 (57-180)||(27567281-27567404)
chr4 (28-181)||(27557486-27557639)
chr4 (56-171)||(27424514-27424629)
chr4 (30-169)||(27501316-27501455)
chr4 (16-209)||(27414266-27414459)
chr4 (17-210)||(27508838-27509031)
chr4 (30-171)||(27513776-27513917)
chr4 (16-180)||(27556370-27556534)
chr4 (56-170)||(27571648-27571762)
chr4 (57-179)||(27421923-27422049)
chr4 (56-180)||(27419062-27419186)
chr4 (16-171)||(27431148-27431303)
chr4 (16-171)||(27444794-27444949)
chr4 (28-169)||(27554306-27554447)
chr4 (16-170)||(27498400-27498554)
chr4 (120-180)||(27559231-27559291)
chr4 (16-171)||(27479886-27480041)
chr4 (96-171)||(27495601-27495676)
chr4 (16-171)||(27505702-27505857)
chr4 (123-181)||(17970391-17970449)
chr4 (127-171)||(27460574-27460618)
chr4 (123-179)||(27540099-27540155)
chr4 (127-170)||(27473988-27474031)
chr4 (84-171)||(27595438-27595525)
chr4 (119-180)||(27600641-27600702)
chr4 (134-206)||(27437237-27437309)
chr4 (127-171)||(27466917-27466961)
[»] chr5 (3 HSPs)
chr5 (16-242)||(1756686-1756912)
chr5 (16-220)||(1754673-1754877)
chr5 (56-169)||(1754243-1754356)
[»] chr3 (11 HSPs)
chr3 (16-222)||(50909945-50910151)
chr3 (28-228)||(55084783-55084983)
chr3 (16-178)||(38024868-38025030)
chr3 (16-178)||(38031320-38031482)
chr3 (56-177)||(38043928-38044049)
chr3 (124-181)||(48840702-48840759)
chr3 (16-177)||(50911863-50912024)
chr3 (113-178)||(38028759-38028824)
chr3 (126-171)||(50904792-50904837)
chr3 (113-178)||(38040074-38040139)
chr3 (16-184)||(50913481-50913649)
[»] chr8 (2 HSPs)
chr8 (16-179)||(21607288-21607451)
chr8 (95-181)||(21634607-21634693)
[»] chr2 (1 HSPs)
chr2 (123-181)||(3073661-3073719)
[»] chr7 (1 HSPs)
chr7 (18-82)||(21477463-21477526)


Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 49)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 16 - 431
Target Start/End: Original strand, 27506683 - 27507098
Alignment:
Q  16 caaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27506683 caaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatca 27506782  T
Q  116 agcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatgagcca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  27506783 agcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttcttgcttgaatgagcca 27506882  T
Q  216 taaatctgacactttagcatactgacagattatagagaaattttgtaccataggaattttttagcttgtaaaaattatacctttttattggaaacattga 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||| ||    
T  27506883 taaatctgacactttagcatactgacagattatagagaaattttgtaccatacaaattttttaacttgtaaaaattatacctttttattggaaacatcga 27506982  T
Q  316 aaaatacttatctgaattnnnnnnnnnncaacttt-atttttcctttcttgttaaatgtcaataaaattggttactttatcatttacaatttaaacactc 414  Q
    ||||||||||||||||||          ||||||| || ||||| |||||||  |||| |||||| ||  |||||||||||| ||||||||| | |||||    
T  27506983 aaaatacttatctgaattaaaagaaaaacaactttcatatttcc-ttcttgtgtaatgacaataagatcagttactttatcaattacaatttcagcactc 27507081  T
Q  415 ctcaattagaagatcac 431  Q
    | ||||| ||| |||||    
T  27507082 cgcaatttgaacatcac 27507098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 332
Target Start/End: Complemental strand, 27486098 - 27485780
Alignment:
Q  16 caaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatca 115  Q
    ||||||||||||||||||| ||||| ||||||||||||| |||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27486098 caaagggctatgttgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaaccattgtttcaagaattgctacatca 27485999  T
Q  116 agcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaa-tgagcc 214  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||| |||||||| |||| || ||||||    
T  27485998 agcggaagaagaatttggatatgatcatcccatgggtggcctcaccattccttgcactgaaggcgtctttcaacacgtaacttcttgcttaaattgagcc 27485899  T
Q  215 ataaatctgacactttagcatactgacagatta-tagagaaattttgtaccataggaattttttagcttgtaaaaattatacctttttattggaaacatt 313  Q
    || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||      
T  27485898 atgaatctgacactttagcatactgacagattagtagagaaattttgtaccataggaattttttaacttgtaaaaattataccttctcattggaaacaga 27485799  T
Q  314 gaaaaatacttatctgaat 332  Q
    |||||||| ||||||||||    
T  27485798 gaaaaatagttatctgaat 27485780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 27479038 - 27478814
Alignment:
Q  16 caaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatca 115  Q
    ||||||||||||||||||| ||||| ||||||||||||| |||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27479038 caaagggctatgttgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaaccattgtttcaagaattgctacatca 27478939  T
Q  116 agcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatgagcca 215  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| || ||||| ||||||||| ||||||||| || |    
T  27478938 agcggaagaagaatttggatatgatcatcccatgggtggcctcaccattccttgctccgaagatgtgttccaacatataacttcttgcttgaatgggcta 27478839  T
Q  216 taaatctgacactttagcatactga 240  Q
    | | ||| ||||| || ||||||||    
T  27478838 tgattcttacactgtaacatactga 27478814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 27497477 - 27497273
Alignment:
Q  16 caaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatca 115  Q
    ||||||||||||||||||| ||||| ||||| ||||| | ||||||||||||||| || ||||||||||||||||||||||||||| | ||| |   |||    
T  27497477 caaagggctatgttgcagtgtatgttggagataaacaaaagcggtttgtgatccctatctcatacttaaaccaaccattgtttcaatatttgttgagtca 27497378  T
Q  116 agcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatgagcca 215  Q
    ||| || ||||| |||||||||||||||||||  ||||| ||||||||||||||||||||| ||||||| |||| |||||||||||||||||||| || |    
T  27497377 agctgaggaagagtttggatatgatcatcccacaggtggcctcaccattccttgcactgaaaatgtcttccaacgcataacttctcgcttgaatgggcta 27497278  T
Q  216 taaat 220  Q
    |||||    
T  27497277 taaat 27497273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 27563501 - 27563304
Alignment:
Q  16 caaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatca 115  Q
    ||||||||||| ||||||| || || ||||| ||||| | | |  ||||||||||  |||||||||| |||||| ||||||||||||| |||||   |||    
T  27563501 caaagggctatcttgcagtgtacgttggagataaacaaaagagaattgtgatccccgtatcatacttgaaccaaacattgtttcaagatttgctgagtca 27563402  T
Q  116 agcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatgagc 213  Q
    ||| |||||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  27563401 agccgaagaagagtttggatatgatcatccaatgggtggcctcacaattccttgcactgaagatgcctttcaacatataacttctcgcttgaatgagc 27563304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 27570204 - 27570012
Alignment:
Q  16 caaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatca 115  Q
    ||||||| ||| ||||||||||||| ||||||||||||||||||| |||||||||  |||||||||||| |||||| |  |||||||| |||||   |||    
T  27570204 caaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgctgagtca 27570105  T
Q  116 agcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaa 208  Q
    ||| || ||||| || ||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||| ||||| |||||| ||||    
T  27570104 agctgaggaagagttcggatatgatcatcccatgggtggcctcaccattccttgcaccgaagatatctttcaacatataacatctcgcatgaa 27570012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 57 - 227
Target Start/End: Original strand, 27412690 - 27412860
Alignment:
Q  57 cggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatcaagcggaagaagaatttggatatgatcatcccatgggtggac 156  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||| ||  |   |||||| |||||||| ||||||||||||||||| |||||||| |    
T  27412690 cggtttgtgatcccaatatcatacttgaaccaaccattatttcaagacttattgagtcaagctgaagaagagtttggatatgatcatccaatgggtggcc 27412789  T
Q  157 tcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatgagccataaatctgacac 227  Q
    |||||||||||||||| ||||||||||||||||| ||||| ||||||| ||||| || || ||||||||||    
T  27412790 tcaccattccttgcacggaagatgtctttcaacatataacatctcgctcgaatgggctatgaatctgacac 27412860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 27415609 - 27415798
Alignment:
Q  16 caaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatca 115  Q
    ||||||| ||| ||||||| ||||| |||   ||||| | ||| ||||||||||| ||||||||||| |||||||||| ||||||||| ||| |   |||    
T  27415609 caaagggatatcttgcagtgtatgttgga---aaacaaaagcgatttgtgatccccatatcatacttgaaccaaccatcgtttcaagacttgttgagtca 27415705  T
Q  116 agcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaa 208  Q
    ||| || ||||| ||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  27415706 agctgaggaagagtttggatatgatcattccatgggtggcctcaccattccttgcacagaagatgtctttcaacacataacatctcgcttgaa 27415798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 27420393 - 27420601
Alignment:
Q  16 caaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatca 115  Q
    ||||||| ||| ||||||||||||| ||||||||||||||||||| | | |||||  |||||||||| | |||||| |  |||||||  |||||   |||    
T  27420393 caaagggatatcttgcagtatatgttggagagaaacagacgcggtatttaatccccgtatcatacttgagccaaccttcatttcaaggcttgctgagtca 27420492  T
Q  116 agcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatgagcca 215  Q
    ||  || ||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||| || |    
T  27420493 agttgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgcacggaagatgtctttcaacatataacttcttgcttcaatgggcta 27420592  T
Q  216 taaatctga 224  Q
    | |||||||    
T  27420593 tgaatctga 27420601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 16 - 227
Target Start/End: Original strand, 27425797 - 27426008
Alignment:
Q  16 caaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatca 115  Q
    ||||||| ||| ||||||||||||| ||||||||||| | ||||| ||||||||||||||||||||| ||||||||||  |||||||| ||  |   |||    
T  27425797 caaagggatatcttgcagtatatgttggagagaaacaaaagcggtatgtgatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtca 27425896  T
Q  116 agcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatgagcca 215  Q
    |   || ||||| |||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||| || || |||||||||||||  | |    
T  27425897 atttgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgcaccgaggatgtatttcaacatatgacatctcgcttgaatggccta 27425996  T
Q  216 taaatctgacac 227  Q
    | ||||||||||    
T  27425997 tgaatctgacac 27426008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 27468481 - 27468260
Alignment:
Q  17 aaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatcaa 116  Q
    ||||||||||||||| || ||||| |||||||||| |  |||||||||  ||||  ||||||||||||||||||| |  |||||||| ||| |   ||||    
T  27468481 aaagggctatgttgcggtgtatgttggagagaaactggtgcggtttgtagtccctgtatcatacttaaaccaaccttcatttcaagacttgttgagtcaa 27468382  T
Q  117 gcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatgagccat 216  Q
     | || |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |||| ||||  ||||||||  | ||    
T  27468381 tccgaggaagaatttggatatgatcatcccatgggtggcctcaccattccttgcacggaagatgtcttccaacatataatttcttccttgaatggactat 27468282  T
Q  217 aaatctgacactttagcatact 238  Q
     ||||| ||||| |||||||||    
T  27468281 gaatcttacactgtagcatact 27468260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 27503908 - 27504101
Alignment:
Q  17 aaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatcaa 116  Q
    ||||||||||||| | || ||||| |||||||||  | ||||||||||  | ||  |||||||||| |||||||| |  |||||||| ||| |   ||||    
T  27503908 aaagggctatgtttccgtgtatgttggagagaaattggcgcggtttgtagttcctgtatcatacttgaaccaaccttcatttcaagacttgttgagtcaa 27504007  T
Q  117 gcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatg 210  Q
    || || ||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||    
T  27504008 gccgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgcaccgaagatgtcttccaacacataacttcttgcttgaatg 27504101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 60 - 212
Target Start/End: Original strand, 27585717 - 27585869
Alignment:
Q  60 tttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatcaagcggaagaagaatttggatatgatcatcccatgggtggactca 159  Q
    |||||||||||  |||||||||| |||||||||||||||||||| ||| |   |||||| |||||||| ||||||||||||||||| ||||| || ||||    
T  27585717 tttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgatgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctca 27585816  T
Q  160 ccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatgag 212  Q
    ||||||||||||| ||||||| |||  |||| ||||||| |||||||||||||    
T  27585817 ccattccttgcacagaagatgccttcaaacatataacttatcgcttgaatgag 27585869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 16 - 200
Target Start/End: Original strand, 27527146 - 27527326
Alignment:
Q  16 caaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatca 115  Q
    ||||||||||| |||| || ||||| ||||| |||||||  ||||||||||||||||||||| ||||||||||||||| ||||| ||| |||||   |||    
T  27527146 caaagggctatcttgcggtgtatgttggagataaacagaaacggtttgtgatcccaatatcacacttaaaccaaccatcgtttctagagttgctgagtca 27527245  T
Q  116 agcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttct 200  Q
    ||| || ||||| |||||||||||||||||||||||     || | |||||||||| |||||||||||| ||||| |||||||||    
T  27527246 agctgaggaagagtttggatatgatcatcccatggg----atcccaattccttgcagtgaagatgtcttccaacatataacttct 27527326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 27566106 - 27565912
Alignment:
Q  16 caaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatca 115  Q
    ||||||| ||| ||||||| ||||| ||||||||||| | ||| ||||||||||| ||||||||| | |||||||||||||||||||| |||||    ||    
T  27566106 caaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccattgtttcaagacttgctgataca 27566007  T
Q  116 agcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatg 210  Q
    ||  || |||||   ||||||||||||||| |||||||| ||||||||||||||    ||||||||||| ||||| ||||||||| |||||||||    
T  27566006 agttgaggaagagcatggatatgatcatccaatgggtggcctcaccattccttgtggcgaagatgtcttccaacatataacttcttgcttgaatg 27565912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 27475733 - 27475540
Alignment:
Q  17 aaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatcaa 116  Q
    ||||||||||||||| || ||||| |||||||||  | ||||||||||  | ||  |||||||||| || ||||| |  |||||||| ||| |   ||||    
T  27475733 aaagggctatgttgccgtgtatgttggagagaaattggcgcggtttgtagttcctgtatcatacttgaatcaaccttcatttcaagacttgttgagtcaa 27475634  T
Q  117 gcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatg 210  Q
    || || ||||| |||||||||||||||||||||||||| ||||||||||||||| | ||||||||||| ||||| ||||||||| |||||||||    
T  27475633 gccgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgctccgaagatgtcttccaacatataacttcttgcttgaatg 27475540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 27524510 - 27524733
Alignment:
Q  17 aaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatcaa 116  Q
    ||||||||| |||||||| ||||| |||||||||| |||||||||  |  | ||  ||||||| || |||||||| |  |||||||| ||| |  |||||    
T  27524510 aaagggctacgttgcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaa 27524609  T
Q  117 gcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatgagccat 216  Q
    || || ||||| ||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||||| ||||| ||||||||  |||||||||  || |    
T  27524610 gctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccgtgcaccgaagatgtcttccaacatataacttcatgcttgaatggccctt 27524709  T
Q  217 aaatctgacactttagcatactga 240  Q
     || || |||||||| ||||||||    
T  27524710 gaaccttacactttaacatactga 27524733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 57 - 171
Target Start/End: Complemental strand, 27411570 - 27411456
Alignment:
Q  57 cggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatcaagcggaagaagaatttggatatgatcatcccatgggtggac 156  Q
    ||||| ||||| ||| |||||||||| |||||||||| |||||||||||| ||| ||||||| |||||||||||||||||||||||||| |||||||| |    
T  27411570 cggttcgtgattccagtatcatacttgaaccaaccatcgtttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtc 27411471  T
Q  157 tcaccattccttgca 171  Q
    |||| ||||||||||    
T  27411470 tcacaattccttgca 27411456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 27514877 - 27515098
Alignment:
Q  17 aaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatcaa 116  Q
    ||||||||||||||| || ||||| |||||||||| |  |||||||||  ||||  |||||||||| || ||||| |  |||||||| ||| |   ||||    
T  27514877 aaagggctatgttgcggtgtatgttggagagaaactggtgcggtttgtagtccctgtatcatacttgaatcaaccttcatttcaagacttgttgagtcaa 27514976  T
Q  117 gcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatgagccat 216  Q
     | || |||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||| || || |||| ||||  ||||||||  | ||    
T  27514977 tccgaggaagaatttggatatgatcatcccatgggtggcctcaccattccttgtacagaagatgtcttccagcatataatttcttccttgaatggactat 27515076  T
Q  217 aaatctgacactttagcatact 238  Q
     ||||| ||||| |||||||||    
T  27515077 gaatcttacactgtagcatact 27515098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 28 - 210
Target Start/End: Original strand, 27423219 - 27423401
Alignment:
Q  28 ttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatcaagcggaagaaga 127  Q
    |||| |||||||| ||| |||||||||| |||  ||||||||  ||||||||||| |||||||| |  |||||||||||| |   |||||| || |||||    
T  27423219 ttgctgtatatgttggatagaaacagacacggcatgtgatccgcatatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaaga 27423318  T
Q  128 atttggatatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatg 210  Q
     ||||| ||  |||||||||||||||| |||||| |||||||||| |||||||| || ||||| |||||||||| ||||||||    
T  27423319 gtttggttacaatcatcccatgggtggcctcaccgttccttgcacggaagatgttttccaacatataacttctcacttgaatg 27423401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 27489946 - 27490139
Alignment:
Q  17 aaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatcaa 116  Q
    |||||||||||||| ||| ||||| ||||||||||| |  ||||||||  ||||  | |||||||||||| ||||||  |||||||| ||| |  |||||    
T  27489946 aaagggctatgttgtagtgtatgttggagagaaacaaaaacggtttgtagtccctgtgtcatacttaaacaaaccatcatttcaagatttgttgaatcaa 27490045  T
Q  117 gcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatg 210  Q
    || || ||||| ||||||||||||||||| |||||||| ||||||||||||  ||  ||||||| ||| ||| |||||| ||||||||| ||||    
T  27490046 gccgaggaagagtttggatatgatcatccaatgggtggcctcaccattcctgtcaacgaagatgacttccaatacataatttctcgctttaatg 27490139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 16 - 171
Target Start/End: Original strand, 27486968 - 27487123
Alignment:
Q  16 caaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatca 115  Q
    ||||||| ||| | ||||| || || |||||||||  || |||||||||||||||  ||||||||||||||||||||| ||||||||||||| |  | ||    
T  27486968 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgatccctttatcatacttaaaccaaccatcgtttcaagaattgttgaacca 27487067  T
Q  116 agcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgca 171  Q
    ||| |||||| |||||| |||||||||||| |||||||| || || ||||||||||    
T  27487068 agctgaagaacaatttgaatatgatcatccaatgggtggtcttactattccttgca 27487123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 27567281 - 27567404
Alignment:
Q  57 cggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatcaagcggaagaagaatttggatatgatcatcccatgggtggac 156  Q
    ||||| ||||| ||| |||||||||| |||||||||| |||||||||||| ||| ||||| | |||||||||||||| ||||||||||| |||||||| |    
T  27567281 cggttcgtgattccagtatcatacttgaaccaaccatcgtttcaagaattactaaatcaaacagaagaagaatttggttatgatcatccaatgggtggtc 27567380  T
Q  157 tcaccattccttgcactgaagatg 180  Q
    |||| ||||||||||  |||||||    
T  27567381 tcacaattccttgcagcgaagatg 27567404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 28 - 181
Target Start/End: Original strand, 27557486 - 27557639
Alignment:
Q  28 ttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatcaagcggaagaaga 127  Q
    |||| |||||||| |||||| ||  || | |||||||||||||||| |||||||||||||||||||  ||||||||||||||  ||||||| || ||| |    
T  27557486 ttgccgtatatgttggagaggaaatgaagaggtttgtgatcccaatgtcatacttaaaccaaccatcatttcaagaattgctgaatcaagctgaggaaca 27557585  T
Q  128 atttggatatgatcatcccatgggtggactcaccattccttgcactgaagatgt 181  Q
    ||||| ||||| |||||| |||||||| ||||| ||||| ||||  ||||||||    
T  27557586 atttgaatatgttcatccaatgggtggtctcactattccatgcagagaagatgt 27557639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 56 - 171
Target Start/End: Complemental strand, 27424629 - 27424514
Alignment:
Q  56 gcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatcaagcggaagaagaatttggatatgatcatcccatgggtgga 155  Q
    |||||||||||| ||| |||||||||| |||||||| |  ||||||||||||||| ||||| | |||||||||| ||||||||||||||| ||||||||     
T  27424629 gcggtttgtgattccagtatcatacttgaaccaaccttcatttcaagaattgctaaatcaatctgaagaagaatatggatatgatcatccaatgggtggt 27424530  T
Q  156 ctcaccattccttgca 171  Q
    || |||||||| ||||    
T  27424529 cttaccattccgtgca 27424514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 30 - 169
Target Start/End: Original strand, 27501316 - 27501455
Alignment:
Q  30 gcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatcaagcggaagaagaat 129  Q
    ||||||||||| |||||| ||  ||  ||||||||||||||||||||||||||||||||||||||||||||||| ||| |  | ||||| || ||| |||    
T  27501316 gcagtatatgttggagaggaaatgaaacggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagacttgttgaaccaagccgaggaacaat 27501415  T
Q  130 ttggatatgatcatcccatgggtggactcaccattccttg 169  Q
    ||| ||| |||||||| | |||||| ||||| ||||||||    
T  27501416 ttgaatacgatcatccaacgggtggtctcactattccttg 27501455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 27414459 - 27414266
Alignment:
Q  16 caaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatca 115  Q
    |||| |||||| ||||||| || || ||||| |||  ||  ||||||||||| ||  |||||||||| |||||||| |  ||||||||||| ||| ||||    
T  27414459 caaaaggctatcttgcagtctacgttggagataaaatgagacggtttgtgattcctgtatcatacttgaaccaaccctcatttcaagaattactaaatca 27414360  T
Q  116 agcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaat 209  Q
    | | |||||||||||||||||||||||||| |||||||| || || ||||| |||| ||||||||  || ||| || | ||||||||| |||||    
T  27414359 atcagaagaagaatttggatatgatcatccaatgggtggtcttacaattccgtgcagtgaagatgaattccaaaacctcacttctcgcatgaat 27414266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 27508838 - 27509031
Alignment:
Q  17 aaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatcaa 116  Q
    |||||||||||||||||| ||||| |||||||||| |||||| |||||  | ||  | ||||| || |||||||| |  |||||||| ||| |  ||||     
T  27508838 aaagggctatgttgcagtgtatgttggagagaaactgacgcgttttgtcgttcctgtgtcatatttgaaccaaccttcatttcaagacttgttgaatcag 27508937  T
Q  117 gcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatg 210  Q
    || || ||||| ||||||||||||||||| | |||||| ||||||||||| ||| | |||||||| || ||||| ||||||||| |||| ||||    
T  27508938 gctgaggaagagtttggatatgatcatccaacgggtggcctcaccattccatgctccgaagatgtgttccaacatataacttcttgcttcaatg 27509031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 30 - 171
Target Start/End: Complemental strand, 27513917 - 27513776
Alignment:
Q  30 gcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatcaagcggaagaagaat 129  Q
    ||||| ||||| |||||||||  || ||||||||||||||||||||||||||| |||||| | | ||| ||||||||| |  | ||||| |||||| |||    
T  27513917 gcagtgtatgtaggagagaaaatgaagcggtttgtgatcccaatatcatacttgaaccaaacctcgttccaagaattgttgaaccaagctgaagaacaat 27513818  T
Q  130 ttggatatgatcatcccatgggtggactcaccattccttgca 171  Q
     || |||||||||||| |||||||| ||||| ||||||||||    
T  27513817 atgaatatgatcatccaatgggtggtctcactattccttgca 27513776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 180
Target Start/End: Complemental strand, 27556534 - 27556370
Alignment:
Q  16 caaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatca 115  Q
    |||| |||||| | ||||| ||||| ||||| |||  || ||| |||||||| || || ||||  || |||||||| |  ||||||||||| ||||||||    
T  27556534 caaaaggctatctcgcagtttatgttggagaaaaaatgaagcgatttgtgattcccatttcattattgaaccaaccttcatttcaagaattactacatca 27556435  T
Q  116 agcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaagatg 180  Q
    ||| |||||||||||||||||||||||| | |||||||| ||||| ||||| |||| ||||||||    
T  27556434 agcagaagaagaatttggatatgatcattctatgggtggtctcacaattccatgcagtgaagatg 27556370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 56 - 170
Target Start/End: Original strand, 27571648 - 27571762
Alignment:
Q  56 gcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatcaagcggaagaagaatttggatatgatcatcccatgggtgga 155  Q
    |||||| ||||| ||| ||||||| || | ||| |||| |||||||||||| ||| ||||| | |||||||||||||||||||||||||| ||||||||     
T  27571648 gcggttcgtgattccagtatcatatttgagccagccatcgtttcaagaattactaaatcaatcagaagaagaatttggatatgatcatccaatgggtggt 27571747  T
Q  156 ctcaccattccttgc 170  Q
    ||||| |||||||||    
T  27571748 ctcacaattccttgc 27571762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 57 - 179
Target Start/End: Complemental strand, 27422049 - 27421923
Alignment:
Q  57 cggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatcaagcggaagaagaattt----ggatatgatcatcccatgggt 152  Q
    ||||| ||||| ||| |||||||||| ||||||||||| ||||||||||| ||| ||||||| ||||||||||||    ||||| |||||||| | ||||    
T  27422049 cggttcgtgattccagtatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatggatacgatcatccaacgggt 27421950  T
Q  153 ggactcaccattccttgcactgaagat 179  Q
    || ||||| |||||||||| |||||||    
T  27421949 ggtctcacaattccttgcagtgaagat 27421923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 56 - 180
Target Start/End: Complemental strand, 27419186 - 27419062
Alignment:
Q  56 gcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatcaagcggaagaagaatttggatatgatcatcccatgggtgga 155  Q
    |||||| ||||| ||| ||||||| || | ||| |||| |||||||||||| ||| ||||| | |||||||||||||||||||||||||| ||||||||     
T  27419186 gcggttcgtgattccagtatcatatttgagccagccatcgtttcaagaattactaaatcaatcagaagaagaatttggatatgatcatccaatgggtggt 27419087  T
Q  156 ctcaccattccttgcactgaagatg 180  Q
    || || |||||||||  ||||||||    
T  27419086 cttacaattccttgcggtgaagatg 27419062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 171
Target Start/End: Complemental strand, 27431303 - 27431148
Alignment:
Q  16 caaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatca 115  Q
    ||||||| ||| ||||||||||||| || ||  ||  || | ||||||||||||||||||||||||| |||||||| |  |||||||||||| |  ||||    
T  27431303 caaagggatatattgcagtatatgttggggatgaaatgaagaggtttgtgatcccaatatcatacttgaaccaaccgtcatttcaagaattgttgaatca 27431204  T
Q  116 agcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgca 171  Q
    ||| || ||| ||||||||||||| ||||| |  ||||| ||||| ||||||||||    
T  27431203 agccgaggaacaatttggatatgaccatccaaccggtggtctcacaattccttgca 27431148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 171
Target Start/End: Complemental strand, 27444949 - 27444794
Alignment:
Q  16 caaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatca 115  Q
    ||||||| ||| |||||||||| || |||||| ||  || | ||||||||||||||||||||||||| | |||| |||  |||||||||||  |  ||||    
T  27444949 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 27444850  T
Q  116 agcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgca 171  Q
    ||| || ||| |||| |||||||| ||||| |||||||| ||||| ||||||||||    
T  27444849 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgca 27444794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 169
Target Start/End: Original strand, 27554306 - 27554447
Alignment:
Q  28 ttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatcaagcggaagaaga 127  Q
    ||||||||||||| |||||| ||  || ||||||||||||  |||| || |  |||| |||||||| |||||||||||||||  ||||||| || ||| |    
T  27554306 ttgcagtatatgttggagaggaaatgaagcggtttgtgatatcaatttctttgttaagccaaccatcgtttcaagaattgctgaatcaagctgaggaaca 27554405  T
Q  128 atttggatatgatcatcccatgggtggactcaccattccttg 169  Q
    |||||||||||||||||| | |||| | ||||| ||||||||    
T  27554406 atttggatatgatcatccaacgggtagtctcacaattccttg 27554447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 27498400 - 27498554
Alignment:
Q  16 caaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatca 115  Q
    ||||||| ||| | ||||||||||| |||||| ||  ||  || ||||||||||| ||||||||||| |||||||||| ||| ||||| ||| |  | ||    
T  27498400 caaagggatatctagcagtatatgttggagaggaaatgaaacgttttgtgatccctatatcatacttgaaccaaccatcgttccaagacttgttgaacca 27498499  T
Q  116 agcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgc 170  Q
    ||| || ||| |||| | |||||||||||| |||||||| ||||| |||||||||    
T  27498500 agccgaggaacaattcgaatatgatcatccaatgggtggtctcactattccttgc 27498554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 27559291 - 27559231
Alignment:
Q  120 gaagaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaagatg 180  Q
    |||||||| ||||||||||||||||| |||||||| ||||| |||||||||| ||||||||    
T  27559291 gaagaagagtttggatatgatcatccaatgggtggtctcacaattccttgcagtgaagatg 27559231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 171
Target Start/End: Original strand, 27479886 - 27480041
Alignment:
Q  16 caaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatca 115  Q
    |||| |||||| | |||||||| || |||||||||  || ||| |||||||| ||  |||||||||| |||||| |||  || ||| | ||| |  | ||    
T  27479886 caaaaggctatctagcagtatacgtaggagagaaaatgaagcgttttgtgattcctgtatcatacttgaaccaaacatcattccaaaagttgttgaacca 27479985  T
Q  116 agcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgca 171  Q
    ||| || ||| |||||| |||||||||||| |||||||| ||||||||||||||||    
T  27479986 agctgaggaacaatttgaatatgatcatccaatgggtggtctcaccattccttgca 27480041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 171
Target Start/End: Original strand, 27495601 - 27495676
Alignment:
Q  96 tttcaagaattgctacatcaagcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgca 171  Q
    |||||| ||||||||  | |||| |||||||| ||||||| | ||||||| |||||||| ||||||||||||||||    
T  27495601 tttcaacaattgctaggtaaagctgaagaagagtttggatttaatcatccaatgggtggtctcaccattccttgca 27495676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 171
Target Start/End: Complemental strand, 27505857 - 27505702
Alignment:
Q  16 caaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatca 115  Q
    ||||||| ||| | ||||| || || |||||||||  || |||||||||||| ||  |||||||||| |||||| | |  || ||||||||| |  | ||    
T  27505857 caaaggggtatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaattgttgaacca 27505758  T
Q  116 agcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgca 171  Q
    ||| || ||| |||||| |||||| ||||| |||||||| ||||| ||||||||||    
T  27505757 agctgaggaacaatttgaatatgaccatccaatgggtggtctcactattccttgca 27505702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 17970391 - 17970449
Alignment:
Q  123 gaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaagatgt 181  Q
    |||||||| ||||| |||||||| |||||||| ||||| ||||||||||| ||||||||    
T  17970391 gaagaattcggatacgatcatccaatgggtggcctcacaattccttgcacagaagatgt 17970449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 27460574 - 27460618
Alignment:
Q  127 aatttggatatgatcatcccatgggtggactcaccattccttgca 171  Q
    |||||| |||||||||||| |||||||| ||||||||||||||||    
T  27460574 aatttgaatatgatcatccaatgggtggtctcaccattccttgca 27460618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 27540099 - 27540155
Alignment:
Q  123 gaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaagat 179  Q
    ||||||||||| ||  ||||||| ||||||||||| ||||||||||||| |||||||    
T  27540099 gaagaatttgggtaccatcatccaatgggtggactaaccattccttgcagtgaagat 27540155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 170
Target Start/End: Original strand, 27473988 - 27474031
Alignment:
Q  127 aatttggatatgatcatcccatgggtggactcaccattccttgc 170  Q
    |||||| |||||||||||| |||||||| |||||||||||||||    
T  27473988 aatttgaatatgatcatccaatgggtggtctcaccattccttgc 27474031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 171
Target Start/End: Original strand, 27595438 - 27595525
Alignment:
Q  84 aaccaaccattgtttcaagaattgctacatcaagcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgca 171  Q
    |||| |||||| ||||||||||| |||  |||||| ||| |||| |||||||   |||||||||||||||| || || ||||||||||    
T  27595438 aaccgaccattatttcaagaattactaagtcaagcagaaaaagagtttggattcaatcatcccatgggtggtcttacaattccttgca 27595525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 27600641 - 27600702
Alignment:
Q  119 ggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaagatg 180  Q
    ||||||||||||||| ||  ||||||| |||||||| ||||| ||||||||||  |||||||    
T  27600641 ggaagaagaatttggttacaatcatccaatgggtggtctcacaattccttgcaaagaagatg 27600702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 206
Target Start/End: Original strand, 27437237 - 27437309
Alignment:
Q  134 atatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttg 206  Q
    |||||||||||| |||| ||| ||  | ||||||||||| ||||||||||| || |||||||  |||||||||    
T  27437237 atatgatcatccaatggttggccttcctattccttgcaccgaagatgtcttccagcacataatgtctcgcttg 27437309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 27466917 - 27466961
Alignment:
Q  127 aatttggatatgatcatcccatgggtggactcaccattccttgca 171  Q
    |||||| |||||||||||| |||||||| ||||| ||||||||||    
T  27466917 aatttgaatatgatcatccaatgggtggtctcactattccttgca 27466961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 1756912 - 1756686
Alignment:
Q  16 caaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatca 115  Q
    ||||||||||| |||||||  |||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||| | ||| |   |||    
T  1756912 caaagggctatcttgcagtgaatgttggagagaaacagaagcggtttgtgatcccaatatcatacttgaaccaaccatcgtttcaatacttgttgagtca 1756813  T
Q  116 agcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatgagcca 215  Q
    ||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| ||| ||||| || || ||| ||||||||| || |    
T  1756812 agctgaagaagaatttggatatgatcaccccatgggtggcctcaccattccttgcaccgaagatgccttccaacatattacctcttgcttgaatgggcta 1756713  T
Q  216 taaatctgacactttagcatactgaca 242  Q
    | |||||   ||| |||||||||||||    
T  1756712 tgaatcttttactgtagcatactgaca 1756686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 1754673 - 1754877
Alignment:
Q  16 caaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatca 115  Q
    ||||||||||||||||||| ||| | |||||||||||||  |||  ||||||||||||||||||||| || ||||||| |||||||   ||| |   |||    
T  1754673 caaagggctatgttgcagtgtatattggagagaaacagaaacggcatgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtca 1754772  T
Q  116 agcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatgagcca 215  Q
    ||| |  ||||| ||||||||||||||||| |||||||| |||||||||| |||||| |||||||||||  || | ||||||||| |||| |||| || |    
T  1754773 agctgcggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacagaagatgtcttcgaaaatataacttctagcttaaatgggcta 1754872  T
Q  216 taaat 220  Q
    |||||    
T  1754873 taaat 1754877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 56 - 169
Target Start/End: Complemental strand, 1754356 - 1754243
Alignment:
Q  56 gcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatcaagcggaagaagaatttggatatgatcatcccatgggtgga 155  Q
    |||||||||||||||  |||||||||| |||||| | |  |||||| |||||||| |  || | || ||| | |||| |||||||||||| ||||||||     
T  1754356 gcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaaacaaatctgaggaacagtttgaatatgatcatccgatgggtggt 1754257  T
Q  156 ctcaccattccttg 169  Q
    ||||| ||||||||    
T  1754256 ctcactattccttg 1754243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 50909945 - 50910151
Alignment:
Q  16 caaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatca 115  Q
    ||||||| ||| ||||||| ||||| |||||| ||  |  ||||||||| ||||| || |||||||| |||||| | |  |||||| | ||| |  ||||    
T  50909945 caaagggttatcttgcagtgtatgttggagagcaaatgctgcggtttgttatccccatgtcatacttgaaccaagcttcatttcaaaacttgttgaatca 50910044  T
Q  116 agcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatgagcca 215  Q
    || ||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||| |||||||||||    || || ||||||||||| ||||||| |    
T  50910045 agtggaggaagaatttggatatgatcatccaatgggtggcctcacaattccttgcacagaagatgtcttcttgcaaattacttctcgcttcaatgagcta 50910144  T
Q  216 taaatct 222  Q
    |||||||    
T  50910145 taaatct 50910151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 28 - 228
Target Start/End: Original strand, 55084783 - 55084983
Alignment:
Q  28 ttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatcaagcggaagaaga 127  Q
    ||||||| ||||| |||||||||  || ||||||||||||||| || || ||||| ||||||||||  |||||||| ||| |   ||  ||||| |||||    
T  55084783 ttgcagtgtatgttggagagaaaatgaagcggtttgtgatccctatgtcttacttgaaccaaccatcatttcaagacttgttgagtcgggcggaggaaga 55084882  T
Q  128 atttggatatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataacttctcgcttgaatgagccataaatctgacac 227  Q
    ||||||||| |||||||| |||||||| ||||| ||||||||||| |||||||| ||    || || ||||||||||| ||||| | |||||||| ||||    
T  55084883 atttggatacgatcatccaatgggtggcctcacaattccttgcacagaagatgttttctttcatattacttctcgcttcaatgaactataaatcttacac 55084982  T
Q  228 t 228  Q
    |    
T  55084983 t 55084983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 178
Target Start/End: Complemental strand, 38025030 - 38024868
Alignment:
Q  16 caaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatca 115  Q
    ||||||||||| ||||||||||||| |||||| ||  || ||||||||| ||||| || |||||||| |||||| | |  |||||| | ||  |   |||    
T  38025030 caaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtca 38024931  T
Q  116 agcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaaga 178  Q
    ||| || |||||||||||||||||||| || |||||||| ||||| ||||||||||| |||||    
T  38024930 agcagaggaagaatttggatatgatcacccaatgggtggcctcacgattccttgcacagaaga 38024868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 178
Target Start/End: Complemental strand, 38031482 - 38031320
Alignment:
Q  16 caaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatca 115  Q
    ||||||||||| ||||||||||||| |||||| ||  || ||||||||| ||||| || |||||||| |||||| | |  |||||| | ||  |   |||    
T  38031482 caaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtca 38031383  T
Q  116 agcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaaga 178  Q
    ||| || |||||||||||||||||||| || |||||||| ||||| ||||||||||| |||||    
T  38031382 agcagaggaagaatttggatatgatcacccaatgggtggcctcacgattccttgcacagaaga 38031320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 56 - 177
Target Start/End: Original strand, 38043928 - 38044049
Alignment:
Q  56 gcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatcaagcggaagaagaatttggatatgatcatcccatgggtgga 155  Q
    ||||||||||||||| || |||||||| || ||| | | ||||||||| |||||   |||||| || ||||||||||||||||||||||| ||||| ||     
T  38043928 gcggtttgtgatccctatgtcatacttgaatcaaacttcgtttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatccaatgggcggc 38044027  T
Q  156 ctcaccattccttgcactgaag 177  Q
    ||||| ||||||||||| ||||    
T  38044028 ctcacaattccttgcaccgaag 38044049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 48840759 - 48840702
Alignment:
Q  124 aagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaagatgt 181  Q
    |||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||    
T  48840759 aagaatttggatatgatcatccaatgggtggcctcacaattccttgcacagaagatgt 48840702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 177
Target Start/End: Complemental strand, 50912024 - 50911863
Alignment:
Q  16 caaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatca 115  Q
    ||||||||||| |||| |||||||| ||||| ||   ||  |||||||||||||| |  |||||||| |||||| | |  |||||| | ||| |   |||    
T  50912024 caaagggctatcttgcggtatatgttggagacaagatgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaaaacttgttgagtca 50911925  T
Q  116 agcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaag 177  Q
    ||| || |||||||||||||||||||| || |||||||| || || ||||||||||| ||||    
T  50911924 agcagaggaagaatttggatatgatcacccaatgggtggcctaacaattccttgcacagaag 50911863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 113 - 178
Target Start/End: Complemental strand, 38028824 - 38028759
Alignment:
Q  113 tcaagcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaaga 178  Q
    |||||| || ||||||||||||||||| ||||| ||||| || ||||| ||||||||||| |||||    
T  38028824 tcaagccgaggaagaatttggatatgaccatccaatgggcggcctcacaattccttgcacagaaga 38028759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 50904837 - 50904792
Alignment:
Q  126 gaatttggatatgatcatcccatgggtggactcaccattccttgca 171  Q
    ||||| |||||||||||||| |||||||| ||||||||||||||||    
T  50904837 gaattcggatatgatcatccaatgggtggcctcaccattccttgca 50904792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 178
Target Start/End: Complemental strand, 38040139 - 38040074
Alignment:
Q  113 tcaagcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaaga 178  Q
    |||||| || |||||||| |||||||| ||||| ||||| || ||||| ||||||||||| |||||    
T  38040139 tcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccttgcacagaaga 38040074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 50913481 - 50913649
Alignment:
Q  16 caaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatca 115  Q
    |||| |||||| ||||||| ||||| |||||||||  || | ||||  |||| |||||||||| ||| ||  | || || ||||||||||||||    ||    
T  50913481 caaaaggctatcttgcagtgtatgttggagagaaaatgaagaggttcttgattccaatatcattcttgaatgagcctttatttcaagaattgcttagcca 50913580  T
Q  116 agcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaagatgtctt 184  Q
    ||| ||||| |||||||| ||   |||||| |||||||| || || ||||| ||||  |||||||||||    
T  50913581 agctgaagaggaatttggctactgtcatccaatgggtggtcttacaattccctgcaaggaagatgtctt 50913649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 21607451 - 21607288
Alignment:
Q  16 caaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatca 115  Q
    ||||||| ||| |||| |||||||| |||||| ||  || ||||||||| ||||| || |||||||| |||| | | |  |||||| | ||  |   |||    
T  21607451 caaagggatatcttgcggtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccgagcttcctttcaaaacttattgagtca 21607352  T
Q  116 agcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaagat 179  Q
    ||| || |||||||||||||||||||| || |||||||| |||||  |||||||||| ||||||    
T  21607351 agcagaggaagaatttggatatgatcacccaatgggtggcctcacggttccttgcacagaagat 21607288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 181
Target Start/End: Original strand, 21634607 - 21634693
Alignment:
Q  95 gtttcaagaattgctacatcaagcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaagatgt 181  Q
    ||||||||| |||||   |||||| || ||||||||||||||||||||||  ||||| ||  |||| ||||||||||| ||||||||    
T  21634607 gtttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatcgaatgggcggcttcacaattccttgcaccgaagatgt 21634693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 3073661 - 3073719
Alignment:
Q  123 gaagaatttggatatgatcatcccatgggtggactcaccattccttgcactgaagatgt 181  Q
    |||||||| ||||| |||||||| |||||||| ||||| ||||||||||| ||||||||    
T  3073661 gaagaattcggatacgatcatccaatgggtggcctcacaattccttgcacagaagatgt 3073719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 21477526 - 21477463
Alignment:
Q  18 aagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatactt 82  Q
    ||||||||||||||||| ||||| |||||||||  ||| | |||||| |||||||||||||||||    
T  21477526 aagggctatgttgcagtgtatgttggagagaaaatgacaccgtttgt-atcccaatatcatactt 21477463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University