View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14677_high_3 (Length: 352)

Name: NF14677_high_3
Description: NF14677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14677_high_3
NF14677_high_3
[»] chr2 (2 HSPs)
chr2 (17-215)||(8503347-8503545)
chr2 (34-71)||(28925167-28925204)
[»] chr7 (3 HSPs)
chr7 (34-215)||(1848513-1848694)
chr7 (30-215)||(16365297-16365482)
chr7 (36-215)||(2563451-2563629)
[»] chr8 (1 HSPs)
chr8 (11-72)||(21933424-21933485)
[»] chr4 (2 HSPs)
chr4 (38-227)||(11934802-11934991)
chr4 (25-113)||(10589378-10589466)
[»] scaffold0034 (1 HSPs)
scaffold0034 (34-215)||(76046-76227)
[»] chr6 (1 HSPs)
chr6 (34-211)||(15465983-15466160)
[»] scaffold0024 (1 HSPs)
scaffold0024 (96-215)||(39256-39375)
[»] chr5 (1 HSPs)
chr5 (34-229)||(25402635-25402830)
[»] scaffold0503 (1 HSPs)
scaffold0503 (17-65)||(4300-4348)


Alignment Details
Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 8503545 - 8503347
Alignment:
Q  17 ttatgtgaggattttcgtctcccatttctgactcgtatgatgaatagtcttgaataggtatggtttccttttgttttgtcctttctcttgcaatttgggt 116  Q
    ||||| ||||||||||||||| ||||||||||| || |||||||||||||||||| || | || ||||||||| | ||||||||||||||||||| |||     
T  8503545 ttatgcgaggattttcgtctctcatttctgacttgtctgatgaatagtcttgaattgggaaggattccttttgctgtgtcctttctcttgcaattcgggc 8503446  T
Q  117 tgctttccaaagtgctcgtccagtcttgtctatgtctggttctaatgagaaaatacatgttttggtatcacgcatgaaacaaactacacaaagttctta 215  Q
    | |||||| |||||||||| || | || ||||||||||| || |||   ||||||| ||||||||||||||  ||||||||||||||||||||||||||    
T  8503445 ttctttccgaagtgctcgttcaattttttctatgtctggatcgaattgcaaaatacttgttttggtatcacatatgaaacaaactacacaaagttctta 8503347  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 28925167 - 28925204
Alignment:
Q  34 tctcccatttctgactcgtatgatgaatagtcttgaat 71  Q
    ||||||||||| ||||||| ||||||||||||||||||    
T  28925167 tctcccatttcggactcgtctgatgaatagtcttgaat 28925204  T

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Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 34 - 215
Target Start/End: Complemental strand, 1848694 - 1848513
Alignment:
Q  34 tctcccatttctgactcgtatgatgaatagtcttgaataggtatggtttccttttgttttgtcctttctcttgcaatttgggttgctttccaaagtgctc 133  Q
    |||| |||||||||||||| |||||||||||||||||| || ||  |||| | ||||||||||||||| ||||||| | ||| |||||||  ||||||||    
T  1848694 tctctcatttctgactcgtttgatgaatagtcttgaattgggattatttcatgttgttttgtcctttcccttgcaagtcgggctgctttctgaagtgctc 1848595  T
Q  134 gtccagtcttgtctatgtctggttctaatgagaaaatacatgttttggtatcacgcatgaaacaaactacacaaagttctta 215  Q
    || |||| ||||||||| |||| || |||   | ||||||||||||||||| || ||| ||||||| |||| ||||||||||    
T  1848594 gttcagttttgtctatgcctggatcaaattgcagaatacatgttttggtattacacataaaacaaaatacaaaaagttctta 1848513  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 30 - 215
Target Start/End: Original strand, 16365297 - 16365482
Alignment:
Q  30 ttcgtctcccatttctgactcgtatgatgaatagtcttgaataggtatggtttccttttgttttgtcctttctcttgcaatttgggttgctttccaaagt 129  Q
    ||||| |||||||||||||| || |||||||||||| ||||| || || |||||   ||||| ||||||||||||||||| |  |  | |||||| ||||    
T  16365297 ttcgtttcccatttctgacttgtctgatgaatagtcatgaattgggattgtttctggttgttatgtcctttctcttgcaagtcagactactttccgaagt 16365396  T
Q  130 gctcgtccagtcttgtctatgtctggttctaatgagaaaatacatgttttggtatcacgcatgaaacaaactacacaaagttctta 215  Q
    |||||| |||| |||||||||| ||| || |||   |||| || |||||| |||| || ||| ||| |||||||||||||||||||    
T  16365397 gctcgttcagttttgtctatgtttggatcaaattgcaaaacacttgttttagtattacacataaaaaaaactacacaaagttctta 16365482  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 36 - 215
Target Start/End: Original strand, 2563451 - 2563629
Alignment:
Q  36 tcccatttctgactcgtatgatgaatagtcttgaataggtatggtttccttttgttttgtcctttctcttgcaatttgggttgctttccaaagtgctcgt 135  Q
    ||||||||||||||||| ||||||||| || | ||| || || ||||||  ||||| | ||||||| ||||||| | ||| |||||||  ||||||||||    
T  2563451 tcccatttctgactcgtctgatgaataatcctaaattgggattgtttccggttgttctctcctttcccttgcaagtcgggctgctttctgaagtgctcgt 2563550  T
Q  136 ccagtcttgtctatgtctggttctaatgagaaaatacatgttttggtatcacgcatgaaacaaactacacaaagttctta 215  Q
     || | |||||||||| ||| || |||   | ||||| ||||||||||| |||||| ||||||| |||||||||||||||    
T  2563551 tcaattttgtctatgtgtggatcaaattgcagaatacctgttttggtattacgcataaaacaaa-tacacaaagttctta 2563629  T

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Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 21933424 - 21933485
Alignment:
Q  11 cacagattatgtgaggattttcgtctcccatttctgactcgtatgatgaatagtcttgaata 72  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21933424 cacagattatgtgaggattttcgtctcccatttctgactcgtatgatgaatagtcttgaata 21933485  T

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Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 38 - 227
Target Start/End: Original strand, 11934802 - 11934991
Alignment:
Q  38 ccatttctgactcgtatgatgaatagtcttgaataggtatggtttccttttgttttgtcctttctcttgcaatttgggttgctttccaaagtgctcgtcc 137  Q
    ||||||||||||| | |||||||| ||| ||||| || || |||||   ||||||||||||||||||||||| | ||| |||||||  |||||||||| |    
T  11934802 ccatttctgactcctctgatgaattgtcgtgaattgggattgtttctagttgttttgtcctttctcttgcaagtcgggctgctttctgaagtgctcgttc 11934901  T
Q  138 agtcttgtctatgtctggttctaatgagaaaatacatgttttggtatcacgcatgaaacaaactacacaaagttcttaatagcacatagt 227  Q
    ||| |||||||||| ||| || |||   | || || || |||||||| |||||| |||||||||| |||||||||||| ||| |||||||    
T  11934902 agttttgtctatgtttggatcaaattgcagaacacctgctttggtataacgcataaaacaaactatacaaagttcttagtagaacatagt 11934991  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 113
Target Start/End: Original strand, 10589378 - 10589466
Alignment:
Q  25 ggattttcgtctcccatttctgactcgtatgatgaatagtcttgaataggtatggtttccttttgttttgtcctttctcttgcaatttg 113  Q
    ||||| ||||||| ||||||||||||||  ||| |||| |||||||| || ||| ||||  | || || ||||||||||| ||||||||    
T  10589378 ggattctcgtctctcatttctgactcgttagataaatattcttgaattggaatgatttcagtgtgattggtcctttctctagcaatttg 10589466  T

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Target: scaffold0034 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 34 - 215
Target Start/End: Original strand, 76046 - 76227
Alignment:
Q  34 tctcccatttctgactcgtatgatgaatagtcttgaataggtatggtttccttttgttttgtcctttctcttgcaatttgggttgctttccaaagtgctc 133  Q
    |||||||||||  |||||| ||||||||||||||||||  | ||  |||| | ||||| ||||||||||| ||||| | |||  | | ||| |||||  |    
T  76046 tctcccatttcaaactcgtctgatgaatagtcttgaattaggattatttcttattgttctgtcctttctcgtgcaagtcgggccgttctccgaagtgaac 76145  T
Q  134 gtccagtcttgtctatgtctggttctaatgagaaaatacatgttttggtatcacgcatgaaacaaactacacaaagttctta 215  Q
    || |||| ||||| |||||||| || |||   | ||||  |||||||| || |||||| |||||||||||||||||||||||    
T  76146 gttcagttttgtccatgtctggatcaaattgcagaatatttgttttggaattacgcataaaacaaactacacaaagttctta 76227  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 34 - 211
Target Start/End: Original strand, 15465983 - 15466160
Alignment:
Q  34 tctcccatttctgactcgtatgatgaatagtcttgaataggtatggtttccttttgttttgtcctttctcttgcaatttgggttgctttccaaagtgctc 133  Q
    ||||||||||||||||||| |||| ||||||||||||| ||  | |||||    |||| ||||||||| || ||| ||  || |  ||||  ||||||||    
T  15465983 tctcccatttctgactcgtctgattaatagtcttgaatcggggttgtttctggatgttatgtcctttcactagcagttcaggctattttctgaagtgctc 15466082  T
Q  134 gtccagtcttgtctatgtctggttctaatgagaaaatacatgttttggtatcacgcatgaaacaaactacacaaagtt 211  Q
    || || | |||||||||| ||| ||  ||   | ||||| |||||||||| |||||||||||||||||||||||||||    
T  15466083 gttcaattttgtctatgtttgggtcatattgtagaatacctgttttggtaccacgcatgaaacaaactacacaaagtt 15466160  T

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Target: scaffold0024 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 39256 - 39375
Alignment:
Q  96 cctttctcttgcaatttgggttgctttccaaagtgctcgtccagtcttgtctatgtctggttctaatgagaaaatacatgttttggtatcacgcatgaaa 195  Q
    |||| ||||||| ||| ||| ||||||   |||||||| | |||| |||||||||||||| || |||   | ||||| ||||||||||| |||||| |||    
T  39256 ccttgctcttgcgattcgggctgctttttgaagtgctcattcagttttgtctatgtctggatcaaattgcagaatacctgttttggtattacgcataaaa 39355  T
Q  196 caaactacacaaagttctta 215  Q
    |||| |||||||||||||||    
T  39356 caaagtacacaaagttctta 39375  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 229
Target Start/End: Complemental strand, 25402830 - 25402635
Alignment:
Q  34 tctcccatttctgactcgtatgatgaatagtcttgaataggtatggtttccttttgttttgtcctttctcttgcaatttgggttgctttccaaagtgctc 133  Q
    ||||||||||||||||||| |||||||||||| |||||    || ||||    ||||| |||| ||||||||| || | |||  ||||||  |||||||     
T  25402830 tctcccatttctgactcgtctgatgaatagtcgtgaattaagattgtttttggttgttctgtcttttctcttgtaagtcgggcagctttctgaagtgctt 25402731  T
Q  134 gtccagtcttgtctatgtctggttctaatgagaaaatacatgttttggtatcacgcat-gaaacaaactacacaaagttcttaatagcacatagtaa 229  Q
    || |||| |||||||||| ||| || |||   | || || ||||||||||| |||| |  ||||||||||||||||||||||| ||| || ||||||    
T  25402730 gttcagt-ttgtctatgtttgggtcaaattgtagaacacctgttttggtattacgcgtaaaaacaaactacacaaagttcttagtaggacctagtaa 25402635  T

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Target: scaffold0503 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0503
Description:

Target: scaffold0503; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 4300 - 4348
Alignment:
Q  17 ttatgtgaggattttcgtctcccatttctgactcgtatgatgaatagtc 65  Q
    ||||||||| ||||||||||| ||||| ||||||||  |||||||||||    
T  4300 ttatgtgagaattttcgtctctcatttgtgactcgtcagatgaatagtc 4348  T

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