View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14677_high_5 (Length: 301)
Name: NF14677_high_5
Description: NF14677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14677_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 27507113 - 27507400
Alignment:
| Q |
1 |
tatctgcttgcctaaggaaaaacttagacttgtatgtcctcaaatttgacagtaaaaataatatgaacagtcagtgcagagctaaacttatttttcagaa |
100 |
Q |
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| T |
27507113 |
tatctgcttgcctaaggaaaaatgtagacttgtatgtcctcaaatttgacagtaaaaataatatgaacagtcagtgcagagctaaacttatttttcagaa |
27507212 |
T |
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| Q |
101 |
ccaaacataagttgtatccacagaacaaaattagttttgctatttcaattagctaatggggaaaggacctaccatcaaatgtacatgaaagaataaggga |
200 |
Q |
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| T |
27507213 |
ccaaacataagttgtatccacagaacaaaatcagttttgctaattcaattagctaacggggaaaggacctaccatcaaatgtacatgaaagaataaggga |
27507312 |
T |
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| Q |
201 |
aaagaatatgattcaaagaacaagtgtgtgctattcatgcgactttgataacgccttttaagcgttatttggaataacatgcacatca |
288 |
Q |
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| T |
27507313 |
aaaaaatatgattcaaagaacaagtgtgtgctactcatgcgactttgataacgcctattaagagttatttggaataacatgcacatca |
27507400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 159 - 288
Target Start/End: Original strand, 27502259 - 27502388
Alignment:
| Q |
159 |
gggaaaggacctaccatcaaatgtacatgaaagaataagggaaaagaatatgattcaaagaacaagtgtgtgctattcatgcgactttgataacgccttt |
258 |
Q |
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| T |
27502259 |
gggaaaggaattaccaccaaattaacatggaagaataaggaaaaagaatatgattcaaagaacaagtgtgtactattcaagcgattttgatatcaccttt |
27502358 |
T |
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| Q |
259 |
taagcgttatttggaataacatgcacatca |
288 |
Q |
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| T |
27502359 |
gaagtgttatttggagcaacatgcagatca |
27502388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 200 - 288
Target Start/End: Complemental strand, 27484804 - 27484716
Alignment:
| Q |
200 |
aaaagaatatgattcaaagaacaagtgtgtgctattcatgcgactttgataacgccttttaagcgttatttggaataacatgcacatca |
288 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||||| |||| ||||||||| |||||||| |||| |
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| T |
27484804 |
aaaataatatgactcaaagaacaagtgtgtgctattcatgcgacttggataatgcctttgaagcattatttggagcaacatgcagatca |
27484716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 27485634 - 27485571
Alignment:
| Q |
42 |
aaatttgacagtaaaaataatatgaacagtcagtgcagagctaaacttatttttcagaaccaaa |
105 |
Q |
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| T |
27485634 |
aaatttcacagtaaaaataatatgaacagtcagtgcagagctaaagttatttttcagatccaaa |
27485571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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