View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14677_low_13 (Length: 212)

Name: NF14677_low_13
Description: NF14677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14677_low_13
NF14677_low_13
[»] chr1 (1 HSPs)
chr1 (19-193)||(43095279-43095453)
[»] chr3 (3 HSPs)
chr3 (31-193)||(6094860-6095022)
chr3 (31-181)||(44162594-44162744)
chr3 (31-181)||(44188714-44188864)
[»] chr2 (2 HSPs)
chr2 (31-181)||(32727842-32727992)
chr2 (31-181)||(32718858-32719008)


Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 43095453 - 43095279
Alignment:
Q  19 attaaacgcatttataaaaacaaaacactaagcataatcataaaaataaattaatattgaacaaatacttacaacagcttgtaacttgtcaagttccttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43095453 attaaacgcatttataaaaacaaaacactaagcataatcataaaaataaattaatattgaacaaatacttacagcagcttgtaacttgtcaagttccttt 43095354  T
Q  119 tcgcgtttctgctgcaattggcgttgaaaagattgattctcctcagacattctgattttcctcgcactaacttga 193  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43095353 tcacgtttctgctgcaattggcgttgaaaagattgattctcctcagacattctgattttcctcgcactaacttga 43095279  T

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Target: chr3 (Bit Score: 127; Significance: 9e-66; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 31 - 193
Target Start/End: Original strand, 6094860 - 6095022
Alignment:
Q  31 tataaaaacaaaacactaagcataatcataaaaataaattaatattgaacaaatacttacaacagcttgtaacttgtcaagttccttttcgcgtttctgc 130  Q
    ||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||    
T  6094860 tataaaaacaacacattaaccataatcataaaaataaattaatattgaacaaatacttacagcagcttgtaacttgtcaagttcattttcacgtttctgc 6094959  T
Q  131 tgcaattggcgttgaaaagattgattctcctcagacattctgattttcctcgcactaacttga 193  Q
    ||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||    
T  6094960 tgcaattggcgttgaaaagattgattctcttcagacattcttatcttcctcgcactaacttga 6095022  T

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Target: chr3; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 31 - 181
Target Start/End: Original strand, 44162594 - 44162744
Alignment:
Q  31 tataaaaacaaaacactaagcataatcataaaaataaattaatattgaacaaatacttacaacagcttgtaacttgtcaagttccttttcgcgtttctgc 130  Q
    ||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||    
T  44162594 tataaaaacaacacattaaccataatcataaaaataaattaatattgaacaaatacttacagcagcttgtaacttgtcaagttccttttcacgattctgc 44162693  T
Q  131 tgcaattggcgttgaaaagattgattctcctcagacattctgattttcctc 181  Q
    |||||||||||||||||||||| |||||| ||||||||||| || ||||||    
T  44162694 tgcaattggcgttgaaaagattcattctcttcagacattcttatcttcctc 44162744  T

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Target: chr3; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 31 - 181
Target Start/End: Original strand, 44188714 - 44188864
Alignment:
Q  31 tataaaaacaaaacactaagcataatcataaaaataaattaatattgaacaaatacttacaacagcttgtaacttgtcaagttccttttcgcgtttctgc 130  Q
    ||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||    
T  44188714 tataaaaacaacacattaaccataatcataaaaataaattaatattgaacaaatacttacagcagcttgtaacttgtcaagttccttttcacgattctgc 44188813  T
Q  131 tgcaattggcgttgaaaagattgattctcctcagacattctgattttcctc 181  Q
    |||||||||||||||||||||| |||||| ||||||||||| || ||||||    
T  44188814 tgcaattggcgttgaaaagattcattctcttcagacattcttatcttcctc 44188864  T

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Target: chr2 (Bit Score: 107; Significance: 8e-54; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 31 - 181
Target Start/End: Original strand, 32727842 - 32727992
Alignment:
Q  31 tataaaaacaaaacactaagcataatcataaaaataaattaatattgaacaaatacttacaacagcttgtaacttgtcaagttccttttcgcgtttctgc 130  Q
    ||||||||||| ||| ||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||    
T  32727842 tataaaaacaacacattaaccacaatcataaaaataaattaatattgaacaaatacttacagcagcttgtaacttgtcaagttccttttcacgattctgc 32727941  T
Q  131 tgcaattggcgttgaaaagattgattctcctcagacattctgattttcctc 181  Q
    |||||||||||||||||||||| |||||| ||||||||||| || ||||||    
T  32727942 tgcaattggcgttgaaaagattcattctcttcagacattcttatcttcctc 32727992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 31 - 181
Target Start/End: Original strand, 32718858 - 32719008
Alignment:
Q  31 tataaaaacaaaacactaagcataatcataaaaataaattaatattgaacaaatacttacaacagcttgtaacttgtcaagttccttttcgcgtttctgc 130  Q
    ||||||||||| ||| ||| || |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| || ||||||    
T  32718858 tataaaaacaacacattaaccacaatcataaaaataaattaatattgaataaatacttacagcagcttgtaacttgtcaagttccttttcacgattctgc 32718957  T
Q  131 tgcaattggcgttgaaaagattgattctcctcagacattctgattttcctc 181  Q
    |||||||||||||||||||||| |||||| ||||||||||| || ||||||    
T  32718958 tgcaattggcgttgaaaagattcattctcttcagacattcttatcttcctc 32719008  T

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