View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14677_low_14 (Length: 201)
Name: NF14677_low_14
Description: NF14677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14677_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 11 - 183
Target Start/End: Original strand, 47988543 - 47988715
Alignment:
| Q |
11 |
agcaaaggtagaaattaaaaatggcattacagcatgtggtagaaacatggtggatataaataaccnnnnnnnnnnnnnn--gtgcagaaaagtatcaaca |
108 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
47988543 |
agcaagggtagaaattaaaaatggcattacagcatgtggtagaaacatggtggatataaataaccaaaaaaaaaaaaaaaagtgcagaaaagtatcaaca |
47988642 |
T |
|
| Q |
109 |
tatgagaagagcattgtatggataatgataaattactaaccagtgtggtctccaaaattaaacttgtatgctctt |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
47988643 |
tatgagaagagcattgtatggataatgataaattactaacca--gtggtctccaaaattaaacttgtatgctctt |
47988715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University