View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14677_low_4 (Length: 426)
Name: NF14677_low_4
Description: NF14677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14677_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 41 - 413
Target Start/End: Complemental strand, 31438723 - 31438351
Alignment:
| Q |
41 |
tatatggctaattacgttcggtgtatagttgataaaaattacaaggtgtcaaaacttattaaccatgcacttaacgtaatcaacctcgatttgaacgtca |
140 |
Q |
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| T |
31438723 |
tatatggctaattatgttcggtgtatagttgataaaaattacaaggtgtcaaaacttcttaaccatacacttaacgtaatcaacctcgatttgaacgtca |
31438624 |
T |
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| Q |
141 |
gtaatcatgatttttaagtgtgcaaatatacgtgatatatgttataatcatcccgattgtgttcaaatgtacatgattttttggattttgagaagtttgt |
240 |
Q |
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| T |
31438623 |
gtaatcatgatttttaagtgtgcaaatatacgtgatatatattataatcatcccgattgtgttcaaacgtacatgattttttggattttgagaagtttgt |
31438524 |
T |
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| Q |
241 |
gacaaaccttctcacacaaggcagattggactgtatttgcatcagaggagatgagtgagacaacttggtatgttgttgaagaaccagcagtttgtgtgtc |
340 |
Q |
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| T |
31438523 |
gacaaaccttctcacacaaggcagattggactgtatttgcatcagaggagatgagtgagacaacttggtatgttgttgaagaaccagcagtttgtgtgtc |
31438424 |
T |
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| Q |
341 |
aaagaaaccaacttcttgtcttaagactgattttaggtattccactctcattcttgaagcctgtctctctgct |
413 |
Q |
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| T |
31438423 |
aaagaaaccaacttcttgtcttaagactgattttaggtattccactctcattcttgaagcctgtctctctgct |
31438351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 39154181 - 39154136
Alignment:
| Q |
337 |
tgtcaaagaaaccaacttcttgtcttaagactgattttaggtattc |
382 |
Q |
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| T |
39154181 |
tgtcaaagaaaccaacttcttgtcttaggattgattttagatattc |
39154136 |
T |
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