View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14677_low_7 (Length: 327)
Name: NF14677_low_7
Description: NF14677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14677_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 15 - 308
Target Start/End: Complemental strand, 34933683 - 34933399
Alignment:
| Q |
15 |
tgagaagaagttgtagaagaagaagaagctccaaggtatctatgtattttcattgcatgacagttttcgttcgtaatctcttgggttgaagcttcttata |
114 |
Q |
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| T |
34933683 |
tgagaagaagttgtagaagaagaagaagctccaacgtatctatgtattttcattgcatgatagttttcgttcgtaatctctagggttgaagcttcttata |
34933584 |
T |
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| Q |
115 |
agtagaatgagaagaatttgttgaatttgtctctctagggttgcattgcatgacagttttcgtttgtatctctttcaatcatattttcataatcgttgct |
214 |
Q |
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| T |
34933583 |
agtagaatgagaagaatttgt---------ctctctagggttgcattgcatgacagttttcgtttgtatctctttcaatcatattttcataatcgttgct |
34933493 |
T |
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| Q |
215 |
tcattcgcaaggtatctatgtattttcattcttcttctttattttgtcaaaactcaagttgattatcatatatgtctctttctgttgttctctc |
308 |
Q |
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| T |
34933492 |
tcactcgcaaggtatctatgtattttcattcttcttctttattttgtcaaaactcaagttgattatcatatatgtctctttctgttgttctctc |
34933399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 15 - 235
Target Start/End: Complemental strand, 34927175 - 34926958
Alignment:
| Q |
15 |
tgagaagaagttgtagaagaagaagaagctccaaggtatctatgtattttcattgcatgacagttttcgttcgtaatctcttgggttgaagcttcttata |
114 |
Q |
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||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
34927175 |
tgagaagaagttgtagaagaagaag---cttgaaggtatctatgtaatttcattgcatgacagttttttttcgtaatctctagggttgaagcttcttata |
34927079 |
T |
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| Q |
115 |
agtagaatgagaagaatttgttgaatttgtctctctagggttgcattgcatgacagttttcgtttgtatctctttcaatcatattttcataatcgttgct |
214 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||| |
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| T |
34927078 |
cgtagaatgagaagaatttgttgaacttgtctctctagggttgcattgcatgacagttttcgttcttatctctttcaatcttattttcatattcgttgct |
34926979 |
T |
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| Q |
215 |
tcattcgcaaggtatctatgt |
235 |
Q |
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||| || |||||||||||||| |
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| T |
34926978 |
tcactctcaaggtatctatgt |
34926958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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