View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14678_high_10 (Length: 353)
Name: NF14678_high_10
Description: NF14678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14678_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 17 - 346
Target Start/End: Original strand, 48316195 - 48316524
Alignment:
| Q |
17 |
aattgtctctattagttcattcctttgagatttttctattactagattgaaaaggnnnnnnntgcacatcacaaagaaacctagttacctaaagaaaaag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
48316195 |
aattgtctctattagttcattcctttgagatttttctattactagattgaaaagaaaaaaaatgcatatcacaaagaaacctagttacctaaagaaaaag |
48316294 |
T |
|
| Q |
117 |
taaacataccaatgtggttggaataagttcagtttggacatttacaaaaacaagagggacacctgaggaaattgctgcactaaaccaggtcatgcaccta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48316295 |
taaacataccaatgtggttggaataagttcagtttggacatttacaaaaacaagagggacacctgaggaaattgctgcactaaaccaggtcatgcaccta |
48316394 |
T |
|
| Q |
217 |
gctgtggtggtattgatgcagtgctcactgaccagtggcatgaatagaatagagcttacaactgaagaactttggtgaggcagataggtacctactttca |
316 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
48316395 |
gctgtggtggtattgatgcagttctcactgaccagtggcatgaatagaatagagcttacaactgaagaactttggtgaggcagataggaacctactttca |
48316494 |
T |
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| Q |
317 |
tcttccagtcatattttatcgcatcttcat |
346 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
48316495 |
tcttccagtcatattttatcgcatcttcat |
48316524 |
T |
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