View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14678_high_11 (Length: 285)
Name: NF14678_high_11
Description: NF14678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14678_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 53578539 - 53578809
Alignment:
| Q |
1 |
ataacgcaacaaagtgggcaagacctcatggtgtcaagggattttcaggtccaatccaatccataattccacgtgaagctagaagaaagtccaaagatat |
100 |
Q |
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| T |
53578539 |
ataacgcaacaaagtgggcaagacctcacggtgtcaagggattttcaggtccaatccaatccataattccacgtgaagctagaagaaagtccaaagatat |
53578638 |
T |
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| Q |
101 |
taatggaattgattatgaagaacccacttcaccaaaaatatcgtgcatgggacaaatcaagcacaagaagaaacaaatnnnnnnnttgaaagacatggaa |
200 |
Q |
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| T |
53578639 |
taatggaattgattatgaagaacccacttcaccaaaaatatcgtgcatgggacaaatcaagcacaagaagaaacaaataaaaaaatcgaaagacatggaa |
53578738 |
T |
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| Q |
201 |
gtgaagaaacatgtaaacacttttcaaaagatgttgtttcatgttgggaaaccaaaatctgaaggaagaag |
271 |
Q |
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| T |
53578739 |
gtgaagaaacatgtaaacacttttcaaaagatgttgtttcatgttgggaaaccaaaatctgaaggaagaag |
53578809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 15524884 - 15524935
Alignment:
| Q |
120 |
gaacccacttcaccaaaaatatcgtgcatgggacaaatcaagcacaagaaga |
171 |
Q |
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| T |
15524884 |
gaacccacttcaccaaaaatatcgtgcatgggagagatcaagcttaagaaga |
15524935 |
T |
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