View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14678_high_12 (Length: 272)

Name: NF14678_high_12
Description: NF14678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14678_high_12
NF14678_high_12
[»] chr6 (4 HSPs)
chr6 (15-259)||(34676175-34676419)
chr6 (15-99)||(24842087-24842171)
chr6 (15-98)||(34678130-34678213)
chr6 (16-99)||(24841157-24841241)
[»] chr2 (11 HSPs)
chr2 (110-250)||(26975668-26975810)
chr2 (23-99)||(9981878-9981954)
chr2 (15-99)||(14146956-14147040)
chr2 (15-96)||(11907623-11907703)
chr2 (15-99)||(35013972-35014056)
chr2 (27-98)||(34878985-34879056)
chr2 (26-99)||(6006342-6006415)
chr2 (27-94)||(28355693-28355760)
chr2 (24-82)||(14145585-14145643)
chr2 (26-99)||(5999868-5999941)
chr2 (26-82)||(44801997-44802053)
[»] chr8 (6 HSPs)
chr8 (15-99)||(42356326-42356410)
chr8 (15-99)||(17963460-17963544)
chr8 (26-98)||(10868428-10868500)
chr8 (15-99)||(17961565-17961649)
chr8 (27-98)||(10869295-10869366)
chr8 (22-96)||(11957795-11957869)
[»] scaffold0504 (2 HSPs)
scaffold0504 (15-93)||(7090-7168)
scaffold0504 (15-99)||(1674-1757)
[»] chr4 (13 HSPs)
chr4 (24-99)||(3086412-3086487)
chr4 (15-97)||(25728690-25728772)
chr4 (26-98)||(32699682-32699754)
chr4 (26-98)||(32701103-32701175)
chr4 (15-99)||(55515551-55515636)
chr4 (23-99)||(23357941-23358017)
chr4 (15-99)||(4349907-4349991)
chr4 (23-99)||(10224406-10224482)
chr4 (23-62)||(33953070-33953109)
chr4 (25-99)||(55514729-55514804)
chr4 (25-82)||(3334697-3334754)
chr4 (15-99)||(3087944-3088028)
chr4 (23-83)||(23356621-23356681)
[»] chr1 (12 HSPs)
chr1 (15-98)||(46683355-46683438)
chr1 (15-97)||(47477288-47477370)
chr1 (27-98)||(2228109-2228180)
chr1 (18-99)||(5153319-5153401)
chr1 (26-99)||(680625-680698)
chr1 (23-99)||(49617123-49617200)
chr1 (23-99)||(49617910-49617987)
chr1 (27-98)||(47478632-47478703)
chr1 (15-96)||(22154789-22154871)
chr1 (26-99)||(682188-682262)
chr1 (22-96)||(31151943-31152017)
chr1 (23-99)||(51745821-51745897)
[»] chr3 (7 HSPs)
chr3 (26-99)||(39195572-39195645)
chr3 (26-99)||(51970057-51970130)
chr3 (15-62)||(33854404-33854451)
chr3 (26-99)||(39197830-39197903)
chr3 (26-95)||(51969629-51969698)
chr3 (15-82)||(24742768-24742835)
chr3 (23-99)||(23211296-23211372)
[»] chr5 (6 HSPs)
chr5 (26-99)||(30661891-30661964)
chr5 (26-83)||(30667254-30667311)
chr5 (23-99)||(13827580-13827656)
chr5 (24-99)||(34002938-34003014)
chr5 (24-97)||(37987480-37987553)
chr5 (27-98)||(13614782-13614853)
[»] chr7 (5 HSPs)
chr7 (15-99)||(18655095-18655180)
chr7 (27-99)||(40218820-40218892)
chr7 (23-98)||(40220253-40220329)
chr7 (24-98)||(43962741-43962815)
chr7 (22-63)||(46419359-46419400)
[»] scaffold0586 (2 HSPs)
scaffold0586 (23-99)||(7612-7688)
scaffold0586 (23-95)||(8683-8755)
[»] scaffold0176 (1 HSPs)
scaffold0176 (55-99)||(21122-21166)
[»] scaffold0012 (1 HSPs)
scaffold0012 (26-98)||(191163-191235)
[»] scaffold1234 (1 HSPs)
scaffold1234 (23-99)||(1776-1852)
[»] scaffold0170 (1 HSPs)
scaffold0170 (23-99)||(20003-20079)


Alignment Details
Target: chr6 (Bit Score: 176; Significance: 7e-95; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 15 - 259
Target Start/End: Complemental strand, 34676419 - 34676175
Alignment:
Q  15 cagagacatctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggcagnnnnnnnntctatta 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||        ||||||     
T  34676419 cagagacatctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttgccataaagtagggcagaaaaaaaatctattg 34676320  T
Q  115 gcttatattgattttattcaatnnnnnnntgagtgttaaaaagagagtgtccctaacatgaaacaagactcttcacaaaatttcctacaataatttattt 214  Q
    |||||||||||||| |||||||       |||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  34676319 gcttatattgatttcattcaataaacaaatgagtgttaaaaagagagcgtccctgacatgaaacaagactcctcacaaaatttcctacaataatttattt 34676220  T
Q  215 ggttcgaacacatgtcctataagcatgatcccgatgcctttaact 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  34676219 ggttcgaacacatgtcctataagcatgatcccgatgcctttaact 34676175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 24842087 - 24842171
Alignment:
Q  15 cagagacatctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggcag 99  Q
    |||||||| ||||||||||| ||||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||||||||    
T  24842087 cagagacacctgaaaaagtaaggtatttctgcaattttccaaaaaagtagggtatttttgtgttttttggcataaagtagggcag 24842171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 34678130 - 34678213
Alignment:
Q  15 cagagacatctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggca 98  Q
    ||||||||  |||||||||||||||||| ||||||||||| ||||| || ||||||||| | ||||||||||||||||||||||    
T  34678130 cagagacacttgaaaaagtagggtatttctgcaattttccaaaaaagtagggtatttttatattttttggcataaagtagggca 34678213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 24841241 - 24841157
Alignment:
Q  16 agagacatctgaaaaagtagggtatttatgcaattttccgaaaaaa-tatggtatttttgtgttttttggcataaagtagggcag 99  Q
    ||||||| ||||||||||||| ||||| | ||||||| | |||||| || ||||||||||||||||||| |||||||||||||||    
T  24841241 agagacacctgaaaaagtaggatatttctacaatttttcaaaaaaaatagggtatttttgtgttttttgacataaagtagggcag 24841157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 110 - 250
Target Start/End: Complemental strand, 26975810 - 26975668
Alignment:
Q  110 tattagcttatattgattttattcaatnnnnnnntgagtgttaaaaagagagtgtccctaacat--gaaacaagactcttcacaaaatttcctacaataa 207  Q
    |||| |||||||||||||| ||| |||       ||||||||||||| |||| |||| || |||  |||||||||||  ||||||||||||||||||| |    
T  26975810 tattggcttatattgatttcatttaataaaaaaatgagtgttaaaaaaagagcgtccttagcatatgaaacaagactactcacaaaatttcctacaatca 26975711  T
Q  208 tttatttggttcgaacacatgtcctataagcatgatcccgatg 250  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  26975710 tttatttggttcgaacacatgtcctataagcatgatcccgatg 26975668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 9981954 - 9981878
Alignment:
Q  23 tctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggcag 99  Q
    |||||||||||||||||||| ||||||||| |||||||||   | |||||||| |||||||||||||| || |||||    
T  9981954 tctgaaaaagtagggtatttgtgcaatttttcgaaaaaatggagcatttttgtattttttggcataaactaaggcag 9981878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 14146956 - 14147040
Alignment:
Q  15 cagagacatctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggcag 99  Q
    |||||||  |||||||||||||| |||| ||| ||||| ||||||| |  |||||||||||||||||||||| ||| ||||||||    
T  14146956 cagagacccctgaaaaagtagggcatttctgccatttttcgaaaaagtggggtatttttgtgttttttggcaaaaactagggcag 14147040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 11907703 - 11907623
Alignment:
Q  15 cagagacatctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtaggg 96  Q
    |||||||| |||||||  |||||||||| ||||||||||| ||||| |  |||||||| ||||||||||||| |||||||||    
T  11907703 cagagacacctgaaaatatagggtatttctgcaattttcc-aaaaagtggggtattttcgtgttttttggcacaaagtaggg 11907623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 35013972 - 35014056
Alignment:
Q  15 cagagacatctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggcag 99  Q
    ||||||||||||||||| ||||| |||| ||||||||| | ||||| |   | |||||||| |||||||||||||| ||||||||    
T  35013972 cagagacatctgaaaaaatagggcatttgtgcaatttttcaaaaaagtggagcatttttgtattttttggcataaactagggcag 35014056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 34879056 - 34878985
Alignment:
Q  27 aaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggca 98  Q
    |||||||| || |||||||||||||| ||||||| ||||  | |||||||||||||||||  ||||||||||    
T  34879056 aaaaagtaaggcatttatgcaatttttcgaaaaagtatgacagttttgtgttttttggcaagaagtagggca 34878985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 6006342 - 6006415
Alignment:
Q  26 gaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggcag 99  Q
    ||||||||| | ||||||||||||||| ||||||| ||||| | |||||||||||||  ||  |||||||||||    
T  6006342 gaaaaagtatgatatttatgcaatttttcgaaaaagtatggcagttttgtgttttttaacaagaagtagggcag 6006415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 28355693 - 28355760
Alignment:
Q  27 aaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtag 94  Q
    ||||||||  |||||||||||||||| ||||||| ||||||| ||||   |||||||||| |||||||    
T  28355693 aaaaagtaatgtatttatgcaatttttcgaaaaagtatggtagtttttgattttttggcaaaaagtag 28355760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 14145643 - 14145585
Alignment:
Q  24 ctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgtttttt 82  Q
    |||||||||||||  |||| ||||||||| ||||||| |  ||||||||||||||||||    
T  14145643 ctgaaaaagtaggccatttctgcaatttttcgaaaaagtggggtatttttgtgtttttt 14145585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 5999941 - 5999868
Alignment:
Q  26 gaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggcag 99  Q
    |||||||||||| ||||||||||||||  |||||| ||  | | |||||||||||||||||  || ||||||||    
T  5999941 gaaaaagtagggcatttatgcaattttaagaaaaagtagagcagttttgtgttttttggcaagaaatagggcag 5999868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 44802053 - 44801997
Alignment:
Q  26 gaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgtttttt 82  Q
    ||||||||| || |||||| ||||||| ||||||| ||||| | |||||||||||||    
T  44802053 gaaaaagtaaggcatttatacaatttttcgaaaaagtatggcagttttgtgtttttt 44801997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 42356410 - 42356326
Alignment:
Q  15 cagagacatctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggcag 99  Q
    |||||||| |||||||| |||||||||| |||||||||  |||||| || |||||||||||||||||||||||||||||||||||    
T  42356410 cagagacacctgaaaaaatagggtatttctgcaattttttgaaaaagtagggtatttttgtgttttttggcataaagtagggcag 42356326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 17963460 - 17963544
Alignment:
Q  15 cagagacatctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggcag 99  Q
    ||||||||||||||||||||||| |||| ||||||||| ||||||| |  |  |||||||| |||||||||||||| ||||||||    
T  17963460 cagagacatctgaaaaagtagggcatttgtgcaatttttcgaaaaagtgggccatttttgtattttttggcataaactagggcag 17963544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 10868500 - 10868428
Alignment:
Q  26 gaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggca 98  Q
    ||||||||||| |||||||| |||||| ||||||| ||||  | |||||||||||||| || |||||| ||||    
T  10868500 gaaaaagtaggatatttatgtaatttttcgaaaaagtatgacagttttgtgttttttgacaaaaagtatggca 10868428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 17961649 - 17961565
Alignment:
Q  15 cagagacatctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggcag 99  Q
    ||||||||||| ||||||||||| |||| | ||||||| | ||||| |   | |||||||| |||||||||||||| ||||||||    
T  17961649 cagagacatctcaaaaagtagggcatttgtacaatttttcaaaaaagtggagcatttttgtattttttggcataaactagggcag 17961565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 10869295 - 10869366
Alignment:
Q  27 aaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggca 98  Q
    ||||||||| |||||||| ||||||| ||||||| || || | |||| | |||||||||| |||||||||||    
T  10869295 aaaaagtagcgtatttattcaatttttcgaaaaagtagggcaattttttattttttggcaaaaagtagggca 10869366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 11957795 - 11957869
Alignment:
Q  22 atctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtaggg 96  Q
    |||| ||||||||||| ||||||||||||||  |||||| || |||| |||||  |||||| ||| |||||||||    
T  11957795 atctaaaaaagtagggcatttatgcaattttttgaaaaagtagggtagttttgaattttttagcaaaaagtaggg 11957869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 7090 - 7168
Alignment:
Q  15 cagagacatctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagta 93  Q
    |||||||||||||||||||||| ||||| ||||||||| | ||||| ||  ||||||||||||||||||||||||||||    
T  7090 cagagacatctgaaaaagtaggatatttctgcaatttttcaaaaaagtagagtatttttgtgttttttggcataaagta 7168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 1757 - 1674
Alignment:
Q  15 cagagacatctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggcag 99  Q
    |||||||| || ||||||||||||| || || | |||| | ||||| ||||||||||||||||||||||||||||||||||||||    
T  1757 cagagacacctaaaaaagtagggtaattctggattttttc-aaaaagtatggtatttttgtgttttttggcataaagtagggcag 1674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 3086487 - 3086412
Alignment:
Q  24 ctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggcag 99  Q
    |||||||| ||||| |||| ||||||||| |||||||||| |||||||||||||||||||||| ||| ||||||||    
T  3086487 ctgaaaaaatagggcatttctgcaatttttcgaaaaaatagggtatttttgtgttttttggcaaaaactagggcag 3086412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 25728772 - 25728690
Alignment:
Q  15 cagagacatctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggc 97  Q
    |||||||  ||||||||||||| ||||| ||||||||| |||||||||  |  ||||||||||||||||||||||||||||||    
T  25728772 cagagacccctgaaaaagtaggatatttctgcaatttttcgaaaaaatgggacatttttgtgttttttggcataaagtagggc 25728690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 32699754 - 32699682
Alignment:
Q  26 gaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggca 98  Q
    ||||||||||||| ||||||||||||| | ||||| || || | ||||||||||||||||| |||||||||||    
T  32699754 gaaaaagtagggtgtttatgcaatttttcaaaaaagtagggcagttttgtgttttttggcaaaaagtagggca 32699682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 32701103 - 32701175
Alignment:
Q  26 gaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggca 98  Q
    ||||||||| ||||||||||||||||| ||||||| || || | |||||| |||||||||| |||||||||||    
T  32701103 gaaaaagtatggtatttatgcaatttttcgaaaaagtagggcagttttgtattttttggcaaaaagtagggca 32701175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 55515551 - 55515636
Alignment:
Q  15 cagagacatctgaaaaagtagggtatttatgcaattttccgaaaaaa-tatggtatttttgtgttttttggcataaagtagggcag 99  Q
    |||||||  |||||||||||||| |||| ||||||||| | |||||| |  |||||||||||||||||||||| ||| ||||||||    
T  55515551 cagagacccctgaaaaagtagggcatttttgcaatttttcaaaaaaagtggggtatttttgtgttttttggcaaaaactagggcag 55515636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 23357941 - 23358017
Alignment:
Q  23 tctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggcag 99  Q
    ||||||||||||||| |||| ||||||||| |||||||||  || |||||||| |||||| ||| ||| ||||||||    
T  23357941 tctgaaaaagtagggcatttttgcaatttttcgaaaaaatggggcatttttgtatttttttgcacaaactagggcag 23358017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 4349991 - 4349907
Alignment:
Q  15 cagagacatctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggcag 99  Q
    |||||||  |||||||||||||  |||| ||||||||| ||||||| |  | |||||||||||||||||||| ||| ||| ||||    
T  4349991 cagagacccctgaaaaagtaggacatttctgcaatttttcgaaaaagtgagatatttttgtgttttttggcaaaaactagtgcag 4349907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 10224482 - 10224406
Alignment:
Q  23 tctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggcag 99  Q
    ||||||||||||||| ||||| |||||||| ||||||| |  || |||||||| |||||| |||||||  |||||||    
T  10224482 tctgaaaaagtagggcatttacgcaatttttcgaaaaagtggggcatttttgtatttttttgcataaacaagggcag 10224406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 33953070 - 33953109
Alignment:
Q  23 tctgaaaaagtagggtatttatgcaattttccgaaaaaat 62  Q
    ||||||||||||||| |||||||||||||| |||||||||    
T  33953070 tctgaaaaagtagggcatttatgcaatttttcgaaaaaat 33953109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 55514804 - 55514729
Alignment:
Q  25 tgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgtt-ttttggcataaagtagggcag 99  Q
    ||||||||||||| ||||  |||||||| ||||||| |  |||||||||||||| |||||||| ||| ||||||||    
T  55514804 tgaaaaagtagggcatttcagcaatttttcgaaaaagtggggtatttttgtgtttttttggcaaaaactagggcag 55514729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 3334697 - 3334754
Alignment:
Q  25 tgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgtttttt 82  Q
    ||||||||||||| |||| ||||||||| ||||||| |  ||||||||||||| ||||    
T  3334697 tgaaaaagtagggcatttctgcaatttttcgaaaaagtggggtatttttgtgtatttt 3334754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 3087944 - 3088028
Alignment:
Q  15 cagagacatctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggcag 99  Q
    |||||||  ||||||||||| || |||| ||||||||| ||||||| |  | ||||||| ||||||||| || ||| ||||||||    
T  3087944 cagagacccctgaaaaagtatggcatttctgcaatttttcgaaaaagttggatatttttatgttttttgacaaaaactagggcag 3088028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 23356681 - 23356621
Alignment:
Q  23 tctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttg 83  Q
    ||||||||||||||| |||| ||||||||| ||||||| |  || |||||||| |||||||    
T  23356681 tctgaaaaagtagggcatttttgcaatttttcgaaaaagtggggcatttttgtattttttg 23356621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 46683438 - 46683355
Alignment:
Q  15 cagagacatctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggca 98  Q
    |||||||  |||||||||||||| |||| ||||||||| ||||||| |  |||||||||||||||||||||| |||||||||||    
T  46683438 cagagacccctgaaaaagtagggcatttctgcaatttttcgaaaaagtggggtatttttgtgttttttggcaaaaagtagggca 46683355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 47477370 - 47477288
Alignment:
Q  15 cagagacatctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggc 97  Q
    |||||||  |||||||||||||| ||||  |||||||| ||||||| |  |||||||||||||||||||||||||||||||||    
T  47477370 cagagacccctgaaaaagtagggcatttcagcaatttttcgaaaaagtggggtatttttgtgttttttggcataaagtagggc 47477288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 2228109 - 2228180
Alignment:
Q  27 aaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggca 98  Q
    ||||||||||| |||| ||||||||| ||||||| |  |||||||||||||||||||||| |||||||||||    
T  2228109 aaaaagtagggcatttctgcaatttttcgaaaaagtgaggtatttttgtgttttttggcaaaaagtagggca 2228180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 5153319 - 5153401
Alignment:
Q  18 agacatctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgt-gttttttggcataaagtagggcag 99  Q
    ||||| ||||||||||||| ||||||||||||||| | ||||| || |||||||||||  ||||||| ||||||||| |||||    
T  5153319 agacacctgaaaaagtaggatatttatgcaatttttcaaaaaagtaaggtatttttgtatttttttgacataaagtaaggcag 5153401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 680698 - 680625
Alignment:
Q  26 gaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggcag 99  Q
    |||||||||||| |||||||||||||| ||||||| || || | |||||||||||||||||  || ||||||||    
T  680698 gaaaaagtagggcatttatgcaatttttcgaaaaagtagggcaattttgtgttttttggcaagaaatagggcag 680625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 49617200 - 49617123
Alignment:
Q  23 tctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgt-gttttttggcataaagtagggcag 99  Q
    ||||||||||||||| |||| ||||||||| ||||||| || || ||||||||  |||||||||||||| ||||||||    
T  49617200 tctgaaaaagtagggcatttgtgcaatttttcgaaaaagtagggcatttttgtatttttttggcataaactagggcag 49617123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 49617910 - 49617987
Alignment:
Q  23 tctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgt-gttttttggcataaagtagggcag 99  Q
    ||||||||||||||| |||| |||| |||| ||||||| ||||| ||||||||  |||||||||||||| ||||||||    
T  49617910 tctgaaaaagtagggcatttgtgcagtttttcgaaaaagtatggcatttttgtatttttttggcataaactagggcag 49617987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 47478632 - 47478703
Alignment:
Q  27 aaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggca 98  Q
    ||||||||||  |||| ||||||||| |||||||    | ||||||||||||||||||||||||||||||||    
T  47478632 aaaaagtaggacatttctgcaatttttcgaaaaagcgggatatttttgtgttttttggcataaagtagggca 47478703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 22154871 - 22154789
Alignment:
Q  15 cagagacatctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgt-gttttttggcataaagtaggg 96  Q
    |||||||||||||||||||||||||||| |||||||||   ||||| |  || ||||||||  |||||||||||||| |||||    
T  22154871 cagagacatctgaaaaagtagggtatttgtgcaattttttaaaaaagtggggcatttttgtatttttttggcataaactaggg 22154789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 682188 - 682262
Alignment:
Q  26 gaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtg-ttttttggcataaagtagggcag 99  Q
    |||||| |||||||||||||||||||| | ||||| || || | ||||||| ||||||||||  |||||||||||    
T  682188 gaaaaattagggtatttatgcaatttttcaaaaaagtagggcagttttgtgtttttttggcaagaagtagggcag 682262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 31151943 - 31152017
Alignment:
Q  22 atctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtaggg 96  Q
    |||||||||||| ||| |||||| |||||||  |||||| ||||||| |||||   ||||||||| |||||||||    
T  31151943 atctgaaaaagttgggcatttatacaattttttgaaaaagtatggtagttttggtatttttggcaaaaagtaggg 31152017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 51745897 - 51745821
Alignment:
Q  23 tctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggcag 99  Q
    ||||||||||||||| ||||  |||||||| ||||||| |  || |||||||| |||||| ||| ||| ||||||||    
T  51745897 tctgaaaaagtagggcatttgcgcaatttttcgaaaaagtggggcatttttgtatttttttgcacaaactagggcag 51745821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 39195645 - 39195572
Alignment:
Q  26 gaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggcag 99  Q
    ||||||||||||||||||||||||||| ||||||| || || | |||||||||||||||||  |||||||||||    
T  39195645 gaaaaagtagggtatttatgcaatttttcgaaaaagtaaggcagttttgtgttttttggcaagaagtagggcag 39195572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 51970057 - 51970130
Alignment:
Q  26 gaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggcag 99  Q
    ||||||||||||||||||||||||||| ||||||| ||||| |  ||||||||||||||||  || ||||||||    
T  51970057 gaaaaagtagggtatttatgcaatttttcgaaaaagtatggcagctttgtgttttttggcaagaaatagggcag 51970130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 33854451 - 33854404
Alignment:
Q  15 cagagacatctgaaaaagtagggtatttatgcaattttccgaaaaaat 62  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||    
T  33854451 cagagacttctgaaaaagtagggtatttatgcaatttttcgaaaaaat 33854404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 39197830 - 39197903
Alignment:
Q  26 gaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggcag 99  Q
    ||||||||||||||||||||||||||| ||||||| || |  | ||||  |||||||||||  |||||||||||    
T  39197830 gaaaaagtagggtatttatgcaatttttcgaaaaagtaggacagttttaggttttttggcaagaagtagggcag 39197903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 51969698 - 51969629
Alignment:
Q  26 gaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagg 95  Q
    ||||||||||||||||||||  ||||| ||||||| || || | |||||||||||||||||  |||||||    
T  51969698 gaaaaagtagggtatttatgtgatttttcgaaaaagtagggcagttttgtgttttttggcaagaagtagg 51969629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 24742835 - 24742768
Alignment:
Q  15 cagagacatctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgtttttt 82  Q
    ||||||||| ||||||||||||| |||| || |||||| ||||||| |  ||||||||||| ||||||    
T  24742835 cagagacatatgaaaaagtagggcatttgtgtaatttttcgaaaaagtggggtatttttgtatttttt 24742768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 23211372 - 23211296
Alignment:
Q  23 tctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggcag 99  Q
    ||||||||||||||| |||| ||||||||| ||||||| |   | |||||||| |||||| ||| ||| ||||||||    
T  23211372 tctgaaaaagtagggcatttttgcaatttttcgaaaaagtggagcatttttgtatttttttgcacaaactagggcag 23211296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 30661964 - 30661891
Alignment:
Q  26 gaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggcag 99  Q
    ||||||||||||||||| ||||||||| ||||||| || |||| ||||||||||||||||| |||  |||||||    
T  30661964 gaaaaagtagggtatttttgcaatttttcgaaaaagtagggtagttttgtgttttttggcaaaaataagggcag 30661891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 30667254 - 30667311
Alignment:
Q  26 gaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttg 83  Q
    ||||||||||||||||| ||||||||| ||||||| ||||||| ||||||||||||||    
T  30667254 gaaaaagtagggtatttttgcaatttttcgaaaaagtatggtagttttgtgttttttg 30667311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 13827656 - 13827580
Alignment:
Q  23 tctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggcag 99  Q
    ||||||||||||||| |||| ||||||||| ||||||| || || |||||||| |||||| ||| ||| ||||||||    
T  13827656 tctgaaaaagtagggcatttttgcaatttttcgaaaaagtagggcatttttgtatttttttgcacaaactagggcag 13827580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 34003014 - 34002938
Alignment:
Q  24 ctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgtt-ttttggcataaagtagggcag 99  Q
    |||||||||||||| |||| ||||||||| ||||||| |  |||||||||||||| |||||||| ||| ||||||||    
T  34003014 ctgaaaaagtagggcatttctgcaatttttcgaaaaagtgaggtatttttgtgtttttttggcaaaaactagggcag 34002938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 37987553 - 37987480
Alignment:
Q  24 ctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggc 97  Q
    |||||||||||||| |||| ||||||||| ||||||| |    |||||||||||||||| ||| ||||||||||    
T  37987553 ctgaaaaagtagggcatttctgcaatttttcgaaaaagtggaatatttttgtgttttttagcaaaaagtagggc 37987480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 13614853 - 13614782
Alignment:
Q  27 aaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggca 98  Q
    ||||||||||| |||||||||||||| ||||||| ||||  | |||| ||||||||| ||  ||||||||||    
T  13614853 aaaaagtagggcatttatgcaatttttcgaaaaagtatgacagttttatgttttttgacaagaagtagggca 13614782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 18655180 - 18655095
Alignment:
Q  15 cagagacatctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgt-gttttttggcataaagtagggcag 99  Q
    ||||||| ||||||||||||| | |||||||||||||| |||||||||  |  ||||||||  |||||||||||||| ||||||||    
T  18655180 cagagacttctgaaaaagtagagcatttatgcaatttttcgaaaaaatgggacatttttgtatttttttggcataaattagggcag 18655095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 40218892 - 40218820
Alignment:
Q  27 aaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggcag 99  Q
    ||||| |||| ||||||||||||||| ||||||| || |  |||||||| |||||||||||||| ||||||||    
T  40218892 aaaaaataggatatttatgcaatttttcgaaaaagtaggacatttttgtattttttggcataaactagggcag 40218820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 40220253 - 40220329
Alignment:
Q  23 tctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgt-gttttttggcataaagtagggca 98  Q
    ||||||||||||||  |||| ||||||||| |||||||||  || ||||||||  |||||||||||||| |||||||    
T  40220253 tctgaaaaagtaggacatttgtgcaatttttcgaaaaaatggggcatttttgtatttttttggcataaactagggca 40220329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 43962815 - 43962741
Alignment:
Q  24 ctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggca 98  Q
    |||||||||||  | |||| ||||||||| ||||||| |  ||||||| ||||| |||||||| |||||||||||    
T  43962815 ctgaaaaagtaaagcatttctgcaatttttcgaaaaagtggggtatttatgtgtcttttggcaaaaagtagggca 43962741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 46419400 - 46419359
Alignment:
Q  22 atctgaaaaagtagggtatttatgcaattttccgaaaaaata 63  Q
    |||||||||||||||| ||||||||||||||  |||||||||    
T  46419400 atctgaaaaagtagggcatttatgcaattttttgaaaaaata 46419359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 7688 - 7612
Alignment:
Q  23 tctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggcag 99  Q
    ||||||||||||||| |||||||||||||| ||||||| |   | |||||| | |||||||||||||| ||||||||    
T  7688 tctgaaaaagtagggcatttatgcaatttttcgaaaaagtgaagcatttttatattttttggcataaattagggcag 7612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 8683 - 8755
Alignment:
Q  23 tctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagg 95  Q
    ||||||||||||||| |||| ||||||||| ||||||| |  || |||||| | |||||| ||||||| ||||    
T  8683 tctgaaaaagtagggcatttgtgcaatttttcgaaaaagtgaggcatttttatattttttagcataaactagg 8755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 21122 - 21166
Alignment:
Q  55 gaaaaaatatggtatttttgtgttttttggcataaagtagggcag 99  Q
    |||||| || |||||||||||||||||||||||||||||||||||    
T  21122 gaaaaagtagggtatttttgtgttttttggcataaagtagggcag 21166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 191235 - 191163
Alignment:
Q  26 gaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggca 98  Q
    |||||||||||| |||||||||||||| | ||||| || || | |||||||||||||||||  ||||||||||    
T  191235 gaaaaagtagggcatttatgcaatttttcaaaaaagtagggaagttttgtgttttttggcaagaagtagggca 191163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1234 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1234
Description:

Target: scaffold1234; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 1852 - 1776
Alignment:
Q  23 tctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggcag 99  Q
    ||||||||||||||| |||| ||||||||| ||||||| |  || |||||||| |||||| ||| ||| ||||||||    
T  1852 tctgaaaaagtagggcatttttgcaatttttcgaaaaagtggggcatttttgtatttttttgcacaaactagggcag 1776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 20079 - 20003
Alignment:
Q  23 tctgaaaaagtagggtatttatgcaattttccgaaaaaatatggtatttttgtgttttttggcataaagtagggcag 99  Q
    ||||||||||||||||||||  |||||||| ||||||| |  || |||||| | |||||| ||||||| ||||||||    
T  20079 tctgaaaaagtagggtatttgcgcaatttttcgaaaaagtggggcatttttatatttttttgcataaactagggcag 20003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University