View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14678_high_2 (Length: 489)
Name: NF14678_high_2
Description: NF14678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14678_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 14 - 472
Target Start/End: Original strand, 12691613 - 12692070
Alignment:
| Q |
14 |
gtgagaagaaaaagggtaaagggaatactatttcagcaagaacactaacagcaaatgttcatcttctatgtggtaataatttctaaactcatatttattt |
113 |
Q |
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| T |
12691613 |
gtgagaagaaaaagggtaaagggaatactatttcagcaagaacactaacagcaaatgttcatcttctatgtggtaataatttctaaactcatatttattt |
12691712 |
T |
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| Q |
114 |
ttgtaatgctacctacatttggtaacccttctcgaattttaaaaatgttgagacaaagatttctttttcttatttatcattcttaaacaaaacatcaaca |
213 |
Q |
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| T |
12691713 |
ttgtcatgctacctacatttggtaacccttctcgaattttaaaaatgttgaatcaaagatttctttttcttatttatc-ctcttaaacaaaacatcaaca |
12691811 |
T |
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| Q |
214 |
gataaagaaaaaaccagtgaatcaattgtttatttgttacagataatgggaactagatatttccattatcttaaaactttatttatttannnnnnngaca |
313 |
Q |
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| T |
12691812 |
gataaagaaaaaaccagtgaatcaattgtttatttgttacagataatgggaactagatatttccattatcttaaaactttatttatttatttttttgaca |
12691911 |
T |
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| Q |
314 |
aatctaaatgggaaggaaatatacgcgggactaaaccaatacaagtaaattgaaatgttaaactgaatggtacgattaaccctcaatgtaagagtattta |
413 |
Q |
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| T |
12691912 |
aatctaaatgggaaggaaatatacgcgggactaaaccaatacaagtaaattgaaatgttaaactgaatggtacgattaaccctcaatgtaagagcattta |
12692011 |
T |
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| Q |
414 |
catatattattattaattttttactggctatcctattattgttggctgttagacttttg |
472 |
Q |
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| T |
12692012 |
catatattattattaattttttactggctatcctattattgttggctgttagacctttg |
12692070 |
T |
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