View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14678_high_5 (Length: 402)
Name: NF14678_high_5
Description: NF14678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14678_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 31454702 - 31455085
Alignment:
| Q |
1 |
ttaaatttctataattctcttttaccacattcctataaatagattgaagaaacactaattgcaaaacaagcaacatttaacccttgttttattgcacttc |
100 |
Q |
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| T |
31454702 |
ttaaatttctataattctcttttaccacattcctataaatagattgaagaaacactaattgcaaaacaagcaacatttaacccttgttttattgcacttc |
31454801 |
T |
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| Q |
101 |
taagtaaacaacaaaagaagaagaagaaaaatggaaacaatttcaatgttaccatctactcatcaaccattaagatcaattagtttgccaacaagaatac |
200 |
Q |
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| T |
31454802 |
taagtaaacaacaaaagaagaagaaaaaaaatggaaacaatttcaatgttaccatctactcatcaaccattaagatcaattagtttgccaacaagaatac |
31454901 |
T |
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| Q |
201 |
acccatcttcacaaagagttgaagcattattgaaccatcttaaaccacaatcttcatctcaatctctttcaaatacattatgttttgaatcagagacaat |
300 |
Q |
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| T |
31454902 |
acccatcttcacaaagagttgaagcattattgaaccatcttaaaccacaatcttcatctcaatctctttcaaatacattatgttttgaatcagagacaat |
31455001 |
T |
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| Q |
301 |
tcaaagtgatttagttgtgcttgcagagctatacaattgcatggaagaactcttccaatctcaacaaacacaacaagcactttt |
384 |
Q |
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| T |
31455002 |
tcaaagtgatttggttgtgcttgctgagttatacaattgcatggaagaactcttccaatctcaacaaacacaacaagcactttt |
31455085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 376
Target Start/End: Complemental strand, 9385461 - 9385376
Alignment:
| Q |
291 |
cagagacaattcaaagtgatttagttgtgcttgcagagctatacaattgcatggaagaactcttccaatctcaacaaacacaacaa |
376 |
Q |
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| T |
9385461 |
cagagaaaattcagagtgacttagtagggcttgcagagatttacaattgtatggaagaactcttcaactctccacaaactcaacaa |
9385376 |
T |
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