View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14678_low_1 (Length: 824)

Name: NF14678_low_1
Description: NF14678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14678_low_1
NF14678_low_1
[»] chr3 (40 HSPs)
chr3 (345-806)||(26457249-26457709)
chr3 (1-278)||(26457777-26458060)
chr3 (1-166)||(27641182-27641347)
chr3 (691-806)||(40477756-40477869)
chr3 (693-806)||(51344375-51344486)
chr3 (694-768)||(40021081-40021155)
chr3 (694-767)||(29491665-29491738)
chr3 (713-767)||(40473855-40473909)
chr3 (694-768)||(46671339-46671413)
chr3 (694-767)||(42622181-42622254)
chr3 (689-806)||(7862148-7862263)
chr3 (713-806)||(40727643-40727734)
chr3 (692-768)||(50247224-50247300)
chr3 (694-764)||(16136957-16137027)
chr3 (694-768)||(29389028-29389102)
chr3 (694-768)||(43745678-43745752)
chr3 (694-768)||(54428497-54428571)
chr3 (694-768)||(54788358-54788432)
chr3 (695-768)||(1129459-1129532)
chr3 (695-768)||(10279330-10279403)
chr3 (694-767)||(44522025-44522098)
chr3 (691-768)||(53289563-53289640)
chr3 (692-768)||(41282865-41282941)
chr3 (694-807)||(44653177-44653289)
chr3 (694-768)||(26012532-26012607)
chr3 (712-767)||(36375722-36375777)
chr3 (694-768)||(32636628-32636702)
chr3 (694-768)||(51350963-51351037)
chr3 (688-762)||(51756428-51756501)
chr3 (691-767)||(36098872-36098946)
chr3 (694-767)||(46507684-46507757)
chr3 (688-768)||(25482574-25482654)
chr3 (713-806)||(25834253-25834343)
chr3 (686-762)||(35500785-35500861)
chr3 (694-758)||(40784890-40784954)
chr3 (695-767)||(50257802-50257874)
chr3 (694-768)||(1020977-1021051)
chr3 (695-729)||(55059553-55059587)
chr3 (694-767)||(7352499-7352572)
chr3 (704-761)||(47745839-47745896)
[»] chr4 (37 HSPs)
chr4 (345-691)||(23675754-23676101)
chr4 (1-278)||(23675408-23675688)
chr4 (694-806)||(33491456-33491566)
chr4 (695-806)||(54996100-54996209)
chr4 (694-806)||(352767-352877)
chr4 (681-768)||(56104732-56104819)
chr4 (688-807)||(3763111-3763228)
chr4 (694-768)||(50383660-50383734)
chr4 (688-806)||(43363323-43363439)
chr4 (692-768)||(26117746-26117822)
chr4 (692-764)||(32289240-32289312)
chr4 (694-807)||(42177634-42177745)
chr4 (694-806)||(32845948-32846058)
chr4 (694-806)||(54506167-54506277)
chr4 (695-806)||(423153-423262)
chr4 (691-761)||(24980279-24980349)
chr4 (694-806)||(31998728-31998840)
chr4 (694-768)||(53936843-53936917)
chr4 (703-768)||(43147503-43147568)
chr4 (694-767)||(48647353-48647426)
chr4 (714-806)||(5337878-5337968)
chr4 (694-807)||(50607686-50607798)
chr4 (691-807)||(30348458-30348571)
chr4 (694-806)||(34828724-34828834)
chr4 (694-768)||(27990870-27990944)
chr4 (684-806)||(56302825-56302946)
chr4 (715-768)||(8256485-8256538)
chr4 (715-768)||(8269903-8269956)
chr4 (695-768)||(23059100-23059173)
chr4 (687-804)||(33491891-33492007)
chr4 (706-807)||(36631328-36631427)
chr4 (694-806)||(5970994-5971104)
chr4 (694-806)||(9356677-9356787)
chr4 (689-768)||(27761731-27761810)
chr4 (694-768)||(45692955-45693029)
chr4 (694-767)||(126584-126657)
chr4 (694-767)||(4720490-4720563)
[»] chr1 (38 HSPs)
chr1 (689-806)||(38260799-38260914)
chr1 (694-806)||(35874233-35874343)
chr1 (694-806)||(52180236-52180346)
chr1 (694-806)||(51056199-51056308)
chr1 (694-767)||(45622816-45622889)
chr1 (694-806)||(34038459-34038569)
chr1 (694-768)||(48977207-48977281)
chr1 (694-768)||(51787799-51787873)
chr1 (694-767)||(2249898-2249971)
chr1 (694-767)||(24381318-24381391)
chr1 (695-768)||(52345932-52346005)
chr1 (692-760)||(46362359-46362427)
chr1 (694-761)||(12105497-12105564)
chr1 (694-806)||(24230866-24230975)
chr1 (694-806)||(44263648-44263759)
chr1 (694-768)||(17554148-17554222)
chr1 (694-768)||(38717756-38717830)
chr1 (694-768)||(42275667-42275741)
chr1 (695-768)||(6329576-6329648)
chr1 (694-807)||(477728-477839)
chr1 (712-768)||(30896833-30896889)
chr1 (694-762)||(3399150-3399220)
chr1 (689-768)||(6965929-6966008)
chr1 (694-768)||(6526759-6526833)
chr1 (687-761)||(14153020-14153094)
chr1 (689-767)||(25702789-25702867)
chr1 (694-768)||(32710075-32710149)
chr1 (695-768)||(30571009-30571082)
chr1 (695-768)||(46234831-46234904)
chr1 (694-762)||(48760127-48760195)
chr1 (686-729)||(25082119-25082162)
chr1 (689-768)||(47544292-47544371)
chr1 (694-761)||(47693208-47693275)
chr1 (694-768)||(24003751-24003825)
chr1 (694-768)||(30321222-30321296)
chr1 (674-767)||(8396339-8396432)
chr1 (694-767)||(31075942-31076015)
chr1 (695-768)||(32805735-32805808)
[»] chr7 (27 HSPs)
chr7 (694-807)||(30891280-30891393)
chr7 (689-807)||(35357698-35357814)
chr7 (694-761)||(26605392-26605459)
chr7 (695-806)||(1806484-1806593)
chr7 (694-768)||(5583194-5583268)
chr7 (695-805)||(3214521-3214629)
chr7 (694-768)||(18519916-18519990)
chr7 (691-806)||(41047136-41047250)
chr7 (694-768)||(47369550-47369624)
chr7 (694-767)||(30076661-30076734)
chr7 (691-768)||(32529512-32529589)
chr7 (694-767)||(41968754-41968827)
chr7 (694-807)||(6791730-6791842)
chr7 (694-807)||(15954133-15954244)
chr7 (694-806)||(38665890-38666001)
chr7 (695-762)||(46291436-46291503)
chr7 (694-768)||(15715906-15715980)
chr7 (694-768)||(17306930-17307004)
chr7 (694-768)||(24953259-24953333)
chr7 (694-806)||(26413902-26414016)
chr7 (695-768)||(23110761-23110834)
chr7 (713-807)||(35291620-35291712)
chr7 (717-768)||(11750752-11750803)
chr7 (683-734)||(24148789-24148839)
chr7 (704-767)||(45232381-45232444)
chr7 (694-768)||(24812081-24812155)
chr7 (694-767)||(28265085-28265158)
[»] chr6 (12 HSPs)
chr6 (694-806)||(4509432-4509542)
chr6 (694-806)||(243181-243291)
chr6 (694-768)||(3141370-3141444)
chr6 (688-768)||(8310197-8310277)
chr6 (689-768)||(1244812-1244891)
chr6 (694-768)||(9661754-9661828)
chr6 (736-806)||(11763468-11763536)
chr6 (694-767)||(8549886-8549959)
chr6 (714-806)||(33574020-33574110)
chr6 (694-768)||(4576387-4576461)
chr6 (694-768)||(9686778-9686852)
chr6 (694-768)||(23416496-23416570)
[»] chr5 (21 HSPs)
chr5 (694-806)||(13118803-13118913)
chr5 (694-767)||(25929562-25929635)
chr5 (691-768)||(701940-702017)
chr5 (689-807)||(29959876-29959992)
chr5 (694-807)||(13126982-13127093)
chr5 (692-807)||(33210370-33210483)
chr5 (689-762)||(4616697-4616770)
chr5 (695-767)||(42486937-42487009)
chr5 (691-761)||(3425790-3425860)
chr5 (694-768)||(38293625-38293699)
chr5 (695-768)||(3024493-3024566)
chr5 (695-768)||(36428238-36428311)
chr5 (694-768)||(480005-480079)
chr5 (694-768)||(9910373-9910447)
chr5 (694-768)||(36339177-36339251)
chr5 (694-767)||(33678157-33678230)
chr5 (695-767)||(8258395-8258467)
chr5 (694-762)||(28318687-28318755)
chr5 (694-768)||(27979015-27979089)
chr5 (689-767)||(30753783-30753861)
chr5 (739-768)||(34259586-34259615)
[»] chr8 (24 HSPs)
chr8 (688-806)||(29454503-29454620)
chr8 (683-764)||(4214830-4214911)
chr8 (692-767)||(1043058-1043133)
chr8 (694-806)||(6631200-6631310)
chr8 (678-762)||(44542150-44542234)
chr8 (695-762)||(29265932-29265999)
chr8 (694-768)||(2261031-2261105)
chr8 (692-807)||(34633863-34633977)
chr8 (691-768)||(26988718-26988795)
chr8 (694-807)||(2749601-2749711)
chr8 (694-762)||(36162192-36162260)
chr8 (692-768)||(40267477-40267553)
chr8 (695-767)||(40578696-40578768)
chr8 (694-768)||(117811-117885)
chr8 (686-768)||(26522297-26522379)
chr8 (689-767)||(36667230-36667308)
chr8 (694-768)||(37676268-37676342)
chr8 (694-768)||(39300419-39300493)
chr8 (695-806)||(40776913-40777022)
chr8 (695-806)||(41720250-41720360)
chr8 (695-768)||(27847512-27847585)
chr8 (703-768)||(38329780-38329845)
chr8 (689-767)||(15726222-15726299)
chr8 (685-762)||(42444555-42444631)
[»] scaffold0432 (1 HSPs)
scaffold0432 (694-806)||(3324-3434)
[»] chr2 (22 HSPs)
chr2 (690-807)||(38064656-38064771)
chr2 (694-806)||(39620193-39620305)
chr2 (694-806)||(40947058-40947168)
chr2 (683-806)||(35896707-35896828)
chr2 (694-806)||(40495467-40495579)
chr2 (694-807)||(45157532-45157643)
chr2 (694-761)||(42849665-42849732)
chr2 (694-768)||(6945342-6945416)
chr2 (694-768)||(17451615-17451689)
chr2 (690-768)||(30980878-30980956)
chr2 (686-768)||(32602634-32602716)
chr2 (695-768)||(18999050-18999123)
chr2 (695-767)||(3260965-3261037)
chr2 (694-768)||(4049291-4049365)
chr2 (694-768)||(4740229-4740303)
chr2 (694-768)||(34091697-34091771)
chr2 (694-767)||(1580573-1580646)
chr2 (692-768)||(7673630-7673706)
chr2 (694-768)||(9589115-9589189)
chr2 (692-750)||(27400725-27400783)
chr2 (691-768)||(4298232-4298309)
chr2 (694-767)||(11227629-11227701)
[»] scaffold0308 (1 HSPs)
scaffold0308 (694-768)||(7212-7286)
[»] scaffold0184 (1 HSPs)
scaffold0184 (694-762)||(16919-16987)
[»] scaffold0078 (1 HSPs)
scaffold0078 (694-762)||(55857-55925)


Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 345 - 806
Target Start/End: Complemental strand, 26457709 - 26457249
Alignment:
Q  345 aagttatgtttacttttaaattaccgatgataatcaatggaataaatagagaatttgttttgtgatctccaaatgatcggtataagattttatttatgca 444  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| || |||||||||    
T  26457709 aagttatgtttacttttaaattaccgatgataatcaatggaatacatagacaatttgttttgtgatctccaaatgatcggtataagagttcatttatgca 26457610  T
Q  445 agctcatacacttgactcaaacccacacaaaaatttctctttaggcacctagtgttttttcataggcacctcaagttgaccaaaatacctccaacaacaa 544  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26457609 agctcatacacttgactcaaacccacacgaaaatttctctttaggcacctagtgttttttcataggcacctcaagttgaccaaaatacctccaacaacaa 26457510  T
Q  545 ttaactaccattcgtttccaaactccatttaattttagttctagacctatcatatacactaacacataaacataactcatggtcattaattacaatttaa 644  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26457509 ttaactaccattcgtttccaaactacatttaattttagttctagacctatcatatacactaacacataaacataactcatggtcattaattacaatttaa 26457410  T
Q  645 ctcattaaatctatttaccatctctacacaaatcatgtttataattagacaaattctacggtacatctaatatatttgagtgtactagtatacacactct 744  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  26457409 ctcattaaatctatttaccatctctacacaaatcatgtttataattaggcaaattctacggtacatccaatatatttgagtgtactagtacacacactct 26457310  T
Q  745 ttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattatttttaatcatttata 806  Q
    ||||||||||||||||||||||||        ||||||||||||||||||||||||||||||    
T  26457309 ttaaattaatagttaaataagttg-tttttttgaagaaaaatattatttttaatcatttata 26457249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 26458060 - 26457777
Alignment:
Q  1 tgaccaatatcattgatcattatattcaaaccatagaatttaatggaaattcgatgagcaaatctgatctcaatgatttttcatcttttattgatgagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26458060 tgaccaatatcattgatcattatattcaaaccatagaatttaatggaaattcgatgagcaaatctgatctcaatgatttttcatcttttattgatgagaa 26457961  T
Q  101 tttgaaggaggttgatctgaagatgaaagaaatgacaatcaaagatcaagaggaggttggaaatggggtgggattatgaatagga------gtccgaaaa 194  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||       ||||||||    
T  26457960 tttgaaggaggttaatctgaagatgaaagaaatgacaatcaaagatcaaaaggaggttggaaatggggtgggattatgaataggactaaggatccgaaaa 26457861  T
Q  195 atactagttttgaatggctttttcttcttctcttttgttgtatgatatggagtctcttctccactatcatttggatttattgtc 278  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26457860 atactagttttgaatggttttttcttcttctcttttgttgtatgatatggagtctcttctccactatcatttggttttattgtc 26457777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 27641182 - 27641347
Alignment:
Q  1 tgaccaatatcattgatcattatattcaaaccatagaatttaatggaaattcgatgagcaaatctgatctcaatgatttttcatcttttattgatgagaa 100  Q
    |||||||||||||| ||||||  ||||| |||| ||||||||||||| |||  ||||||||| ||||||| |||||||| || | | |||||||||||||    
T  27641182 tgaccaatatcattcatcatttcattcataccacagaatttaatggatatttaatgagcaaacctgatcttaatgatttgtcctatgttattgatgagaa 27641281  T
Q  101 tttgaaggaggttgatctgaagatgaaagaaatgacaatcaaagatcaagaggaggttggaaatgg 166  Q
    ||||| ||||||  |||  |||||||||| ||||  |||  |||||  ||||||||||||||||||    
T  27641282 tttgagggaggtcaatcaaaagatgaaaggaatgcgaattgaagattgagaggaggttggaaatgg 27641347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 691 - 806
Target Start/End: Original strand, 40477756 - 40477869
Alignment:
Q  691 agacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatatta 790  Q
    |||||||||||| |||||| | |||||||||||||||||  ||| || |||||||||||||||||||||||||||||         ||||||||||||||    
T  40477756 agacaaattctatggtacacccaatatatttgagtgtaccggtacacccactctttaaattaatagttaaataagtt--attttttgaagaaaaatatta 40477853  T
Q  791 tttttaatcatttata 806  Q
    ||||| ||||||||||    
T  40477854 ttttttatcatttata 40477869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 693 - 806
Target Start/End: Original strand, 51344375 - 51344486
Alignment:
Q  693 acaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattatt 792  Q
    |||||||||||| |||| | |||||||||||||||||  ||| ||||| |||||||||||||||||||||||||||        |||| |||||||||||    
T  51344375 acaaattctacgatacacccaatatatttgagtgtacaggtacacacattctttaaattaatagttaaataagttg--ttttttgaagcaaaatattatt 51344472  T
Q  793 tttaatcatttata 806  Q
    ||| ||||||||||    
T  51344473 ttttatcatttata 51344486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 694 - 768
Target Start/End: Original strand, 40021081 - 40021155
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| |||||||| |||||||||||||||||| ||| |  |||||||||||||||||||||||| |||||    
T  40021081 caaattctatggtacatccaatatatttgagtgtactggtacatccactctttaaattaatagttaaatgagttg 40021155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 694 - 767
Target Start/End: Original strand, 29491665 - 29491738
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagtt 767  Q
    ||||||||| |||||| | |||||||||||||||||  ||| || |||||||||||||||||||||||||||||    
T  29491665 caaattctatggtacacccaatatatttgagtgtaccggtacacccactctttaaattaatagttaaataagtt 29491738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 713 - 767
Target Start/End: Original strand, 40473855 - 40473909
Alignment:
Q  713 aatatatttgagtgtactagtatacacactctttaaattaatagttaaataagtt 767  Q
    ||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||    
T  40473855 aatatatttgagtgtaccagtacacatactctttaaattaatagttaaataagtt 40473909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 694 - 768
Target Start/End: Original strand, 46671339 - 46671413
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    |||||| ||||||||| | |||||||||||||||||  ||| || |||||||||||||||||||||||| |||||    
T  46671339 caaattatacggtacacccaatatatttgagtgtaccggtacactcactctttaaattaatagttaaatgagttg 46671413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 694 - 767
Target Start/End: Complemental strand, 42622254 - 42622181
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagtt 767  Q
    |||||| || |||||| | |||||||||||||||||  ||| || |||||||||||||||||||||||||||||    
T  42622254 caaattttatggtacacccaatatatttgagtgtaccggtacacccactctttaaattaatagttaaataagtt 42622181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 689 - 806
Target Start/End: Original strand, 7862148 - 7862263
Alignment:
Q  689 ttagacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatat 788  Q
    |||| |||||| || |||||| ||||||||||||||| |||  ||| ||| |||||||||||||||| ||||||||||||        ||||||||||||    
T  7862148 ttaggcaaattttatggtacacctaatatatttgagtataccggtacacatactctttaaattaataattaaataagttg-tttttttgaagaaaaatat 7862246  T
Q  789 tatttttaatcatttata 806  Q
    ||||||| ||||||||||    
T  7862247 tattttt-atcatttata 7862263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 713 - 806
Target Start/End: Complemental strand, 40727734 - 40727643
Alignment:
Q  713 aatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattatttttaatcatttata 806  Q
    |||||||||||||||||  ||| |||||||||||||||||||| ||||||||||||        || |||||||||||||||| ||||||||||    
T  40727734 aatatatttgagtgtaccggtacacacactctttaaattaataattaaataagttg--ttttttgaggaaaaatattattttttatcatttata 40727643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 692 - 768
Target Start/End: Original strand, 50247224 - 50247300
Alignment:
Q  692 gacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| | |||||| | |||||||||||||||||  ||| || |||||||||||||||||||||||| |||||    
T  50247224 gacaaattccatggtacacccaatatatttgagtgtaccggtacacccactctttaaattaatagttaaatgagttg 50247300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 694 - 764
Target Start/End: Complemental strand, 16137027 - 16136957
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataa 764  Q
    ||||||||| |||||||| ||||||||||||||||   ||| |  ||||||||||||||||||||||||||    
T  16137027 caaattctatggtacatccaatatatttgagtgtatcggtacatccactctttaaattaatagttaaataa 16136957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 694 - 768
Target Start/End: Complemental strand, 29389102 - 29389028
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| |||||||| | |||||||||||||||  ||| || ||||||||||||| |||||||||| |||||    
T  29389102 caaattctatggtacatccactatatttgagtgtaccggtacactcactctttaaattcatagttaaatgagttg 29389028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 694 - 768
Target Start/End: Complemental strand, 43745752 - 43745678
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| ||||||   ||||||||||||| |||  ||| || ||||||||||||||||||||||||||||||    
T  43745752 caaattctatggtacactcaatatatttgagtataccggtacacccactctttaaattaatagttaaataagttg 43745678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 694 - 768
Target Start/End: Original strand, 54428497 - 54428571
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| |||||||| | |||||||||||||||  ||| || ||||||||||||| |||||||||| |||||    
T  54428497 caaattctatggtacatccattatatttgagtgtacctgtacacccactctttaaattcatagttaaatgagttg 54428571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 694 - 768
Target Start/End: Original strand, 54788358 - 54788432
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    |||||| || |||||||| |||||||||||||||||   || || |||||||||||||||||||||||| |||||    
T  54788358 caaattgtatggtacatcaaatatatttgagtgtaccgatacacccactctttaaattaatagttaaatgagttg 54788432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 695 - 768
Target Start/End: Complemental strand, 1129532 - 1129459
Alignment:
Q  695 aaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    |||||||| ||||||   |||| ||||||||||||  ||| || ||||||||||||||||||||||||||||||    
T  1129532 aaattctatggtacactcaatacatttgagtgtaccggtacacccactctttaaattaatagttaaataagttg 1129459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 695 - 768
Target Start/End: Complemental strand, 10279403 - 10279330
Alignment:
Q  695 aaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    |||||||| ||||||||||   |||||||||||||   ||||| |||||||||||||||||||||||| |||||    
T  10279403 aaattctatggtacatctatcgtatttgagtgtaccgctatactcactctttaaattaatagttaaatgagttg 10279330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 694 - 767
Target Start/End: Original strand, 44522025 - 44522098
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagtt 767  Q
    ||||||||| |||||||  |||||||||||||||| | ||| |  |||||||||||||||||||||||| ||||    
T  44522025 caaattctatggtacattcaatatatttgagtgtattggtacattcactctttaaattaatagttaaatgagtt 44522098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 691 - 768
Target Start/End: Complemental strand, 53289640 - 53289563
Alignment:
Q  691 agacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    |||||||||||| |||||| | | |||||||||||||||  ||| || ||||||||||||| |||||||||| |||||    
T  53289640 agacaaattctatggtacacccactatatttgagtgtacctgtacactcactctttaaatttatagttaaatgagttg 53289563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 692 - 768
Target Start/End: Complemental strand, 41282941 - 41282865
Alignment:
Q  692 gacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    |||||||| || | |||||| |||||||||||||||||  ||| ||  | |||||||||||||||||||||||||||    
T  41282941 gacaaattttatgatacatccaatatatttgagtgtaccggtacacctattctttaaattaatagttaaataagttg 41282865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 694 - 807
Target Start/End: Original strand, 44653177 - 44653289
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattattt 793  Q
    ||||||||| |||||| |||||| |||||||||||   |||||  |||||||||||||||| ||||||| |||||        |||||||||||||||||    
T  44653177 caaattctatggtacacctaatacatttgagtgtatcggtatagtcactctttaaattaatggttaaatgagttg-tttttttgaagaaaaatattattt 44653275  T
Q  794 ttaatcatttatat 807  Q
    |  |||||||||||    
T  44653276 tctatcatttatat 44653289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 694 - 768
Target Start/End: Complemental strand, 26012607 - 26012532
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaa-ttaatagttaaataagttg 768  Q
    ||||||||| |||||||| | |||||||||||||||| ||| || ||||||||||| || |||||||||| |||||    
T  26012607 caaattctatggtacatccactatatttgagtgtactggtacactcactctttaaatttcatagttaaatgagttg 26012532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 712 - 767
Target Start/End: Complemental strand, 36375777 - 36375722
Alignment:
Q  712 taatatatttgagtgtactagtatacacactctttaaattaatagttaaataagtt 767  Q
    ||||||||||||||||||| ||| || || ||||||||||||||||||||| ||||    
T  36375777 taatatatttgagtgtactggtacactcattctttaaattaatagttaaattagtt 36375722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 694 - 768
Target Start/End: Original strand, 32636628 - 32636702
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| |||||| | |||||||||||||||||   || || ||||| |||||||||||||||||| |||||    
T  32636628 caaattctatggtacacccaatatatttgagtgtaccgatacactcactccttaaattaatagttaaatgagttg 32636702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 694 - 768
Target Start/End: Complemental strand, 51351037 - 51350963
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    |||||| || |||||||| ||||||||||||||||||| || |  |  ||||||||||||||||||||| |||||    
T  51351037 caaattttatggtacatccaatatatttgagtgtactaatacatccgttctttaaattaatagttaaatgagttg 51350963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 688 - 762
Target Start/End: Complemental strand, 51756501 - 51756428
Alignment:
Q  688 attagacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaat 762  Q
    ||||| ||||||||| |||||| | |||||||||||||||||  ||| || |||| |||||||||||||||||||    
T  51756501 attaggcaaattctatggtacacccaatatatttgagtgtac-cgtacactcactttttaaattaatagttaaat 51756428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 691 - 767
Target Start/End: Original strand, 36098872 - 36098946
Alignment:
Q  691 agacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagtt 767  Q
    ||||||||| || |||||| | |||||||||||||||||   || || |||||||||||||||||||||||| ||||    
T  36098872 agacaaattttatggtacacccaatatatttgagtgtacc--tacacccactctttaaattaatagttaaatgagtt 36098946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 694 - 767
Target Start/End: Complemental strand, 46507757 - 46507684
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagtt 767  Q
    ||||||||| |||||| | | |||||||||||||||  ||| || ||||||||||||| |||||||||| ||||    
T  46507757 caaattctatggtacacccactatatttgagtgtaccggtaaactcactctttaaattcatagttaaatgagtt 46507684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 688 - 768
Target Start/End: Complemental strand, 25482654 - 25482574
Alignment:
Q  688 attagacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||| |||||| || |||||| ||||||||||||||||||   ||| ||  | ||||||||||||||||||||| |||||    
T  25482654 attaggcaaattataaggtacacctaatatatttgagtgtatcggtacacctattctttaaattaatagttaaatgagttg 25482574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 713 - 806
Target Start/End: Original strand, 25834253 - 25834343
Alignment:
Q  713 aatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattatttttaatcatttata 806  Q
    ||||||||| |||||||  ||| || ||||||||||||||||||||||||||||||        ||| ||||||||||||||| ||||||||||    
T  25834253 aatatatttaagtgtaccggtacac-cactctttaaattaatagttaaataagttg--ttttttgaaaaaaaatattattttttatcatttata 25834343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 686 - 762
Target Start/End: Original strand, 35500785 - 35500861
Alignment:
Q  686 taattagacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaat 762  Q
    ||||||| ||||||||| |||||| | | |||||||||||| ||  ||| || ||||||||||||| ||||||||||    
T  35500785 taattaggcaaattctatggtacacccactatatttgagtgcaccggtacactcactctttaaattcatagttaaat 35500861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 694 - 758
Target Start/End: Complemental strand, 40784954 - 40784890
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagtt 758  Q
    ||||||||| ||||||| |||||||||||||||||   ||| |  ||||||||||||||||||||    
T  40784954 caaattctatggtacatataatatatttgagtgtatcggtacattcactctttaaattaatagtt 40784890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 695 - 767
Target Start/End: Original strand, 50257802 - 50257874
Alignment:
Q  695 aaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagtt 767  Q
    |||||||| |||||| ||| ||||||||||||||   ||| || ||||||||||||| |||||||||| ||||    
T  50257802 aaattctatggtacacctactatatttgagtgtatcggtacactcactctttaaatttatagttaaatgagtt 50257874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 694 - 768
Target Start/End: Original strand, 1020977 - 1021051
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| |||||| | | |||||||||||||||  ||| || |||| |||||||| |||||||||| |||||    
T  1020977 caaattctatggtacacccactatatttgagtgtaccggtacactcactttttaaattcatagttaaatgagttg 1021051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 695 - 729
Target Start/End: Complemental strand, 55059587 - 55059553
Alignment:
Q  695 aaattctacggtacatctaatatatttgagtgtac 729  Q
    |||||||| ||||||||||||||||||||||||||    
T  55059587 aaattctatggtacatctaatatatttgagtgtac 55059553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 767
Target Start/End: Complemental strand, 7352572 - 7352499
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagtt 767  Q
    ||||||||| |||||||| | ||||||||||||||   ||| || ||||| ||||||| |||||||||| ||||    
T  7352572 caaattctatggtacatccactatatttgagtgtatcggtacactcactcattaaatttatagttaaatgagtt 7352499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 704 - 761
Target Start/End: Original strand, 47745839 - 47745896
Alignment:
Q  704 ggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaa 761  Q
    |||||| | |||||||||||||||||  ||  || |||||||||||||||||||||||    
T  47745839 ggtacacccaatatatttgagtgtaccggtgcactcactctttaaattaatagttaaa 47745896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 345 - 691
Target Start/End: Original strand, 23675754 - 23676101
Alignment:
Q  345 aagttatgtttacttttaaattaccgatgataatcaatggaataaatagagaatttgttttgtgatctccaaatgatcggtataagattttatttatgca 444  Q
    |||||||||||||||||||| ||  |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  23675754 aagttatgtttacttttaaactattgatgatgatcaatggaataaatagagattttgttttgtgatctccaaatgatcggtataagagtttatttatgca 23675853  T
Q  445 agctcatacacttgactcaaacccacacaaaaatttctctttaggcacctagtgttttttcataggcacctcaagttgaccaaaatacctccaacaacaa 544  Q
    |||  ||||||||||||||||||||||  ||||||||||| ||| ||||||  | ||||||| |||||| |||||||||||||||||||||||||||| |    
T  23675854 agcctatacacttgactcaaacccacatgaaaatttctctctagacacctatcgatttttcacaggcacttcaagttgaccaaaatacctccaacaacta 23675953  T
Q  545 ttaactaccattcgtttccaaactccatttaattttagttctagacctatcatatacactaacacataaacataactcatggtcattaattacaatttaa 644  Q
    || |||||| ||||||||||||||  |||||||||  |||| |||| | ||||||||| |||||||||||||||||| ||||| |||||||||| | |||    
T  23675954 tttactaccgttcgtttccaaactgaatttaatttacgttccagacttgtcatatacaataacacataaacataacttatggtaattaattacagtctaa 23676053  T
Q  645 ctcattaaatctatttaccatctc-tacacaaatcatgtttataatta 691  Q
    ||||||||||||  |||||||||| |||||||||||||||||||||||    
T  23676054 ctcattaaatctgcttaccatctcttacacaaatcatgtttataatta 23676101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 23675408 - 23675688
Alignment:
Q  1 tgaccaatatcattgatcattatattcaaaccatagaatttaatggaaattcgatgagcaaatctgatctcaatgatttttcatcttttattgatgagaa 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||    
T  23675408 tgaccaatatcattgatcattatattcaaaccgtagaatttaatggaaattcaatgagcaaatatgatcttaatgatttttcatcttttattgatgagaa 23675507  T
Q  101 tttgaaggaggttgatctgaagatgaaagaaatgacaatcaaagatcaagaggaggttggaaatggggtgggattatgaat-------aggagtccgaaa 193  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||       |||||| || ||    
T  23675508 tttgaaggaggttgatcggaagatgaaagaaatgacaattaaagatcaagacgaggttggaaatgaggtgggattatgaataggacaaaggagt-cggaa 23675606  T
Q  194 aatactagttttgaatggctttttcttcttctcttttgttgtatgatatggagtctcttctccactatcatttggatttattgtc 278  Q
    |||||||||| |||||   ||||| |  || ||||||||||| | ||||||||||| |||||||||||||||||| |||| ||||    
T  23675607 aatactagttatgaat---tttttttctttatcttttgttgtgtaatatggagtcttttctccactatcatttggttttactgtc 23675688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 694 - 806
Target Start/End: Complemental strand, 33491566 - 33491456
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattattt 793  Q
    ||||||||| |||||||| |||||||||||||||||  ||| || | ||||||||||||||||||||||||||||        |||||||||||||||||    
T  33491566 caaattctatggtacatccaatatatttgagtgtaccggtacacccgctctttaaattaatagttaaataagttg--ttttttgaagaaaaatattattt 33491469  T
Q  794 ttaatcatttata 806  Q
    || ||||||||||    
T  33491468 tttatcatttata 33491456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 695 - 806
Target Start/End: Original strand, 54996100 - 54996209
Alignment:
Q  695 aaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattatttt 794  Q
    |||||||| |||||| |||||||||||||||||||| |||||  ||||||||||||||||| |||||| |||||        ||||||||||||||||||    
T  54996100 aaattctatggtacacctaatatatttgagtgtactggtatattcactctttaaattaataattaaatgagttg--ttttttgaagaaaaatattatttt 54996197  T
Q  795 taatcatttata 806  Q
    | ||||||||||    
T  54996198 ttatcatttata 54996209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 694 - 806
Target Start/End: Complemental strand, 352877 - 352767
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattattt 793  Q
    ||||||||| |||||||| ||||||||| |||||||  ||| ||  ||||||||||||||||||||||||||||         |||||||||||||||||    
T  352877 caaattctatggtacatccaatatatttaagtgtaccggtacacctactctttaaattaatagttaaataagtt--cttttttgaagaaaaatattattt 352780  T
Q  794 ttaatcatttata 806  Q
    || ||||||||||    
T  352779 tttatcatttata 352767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 681 - 768
Target Start/End: Complemental strand, 56104819 - 56104732
Alignment:
Q  681 gtttataattagacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||| || ||| ||||||||| |||||||| ||||||||| |||||||  ||| || |||||||||||||||||||||||| |||||    
T  56104819 gtttaaaagtaggcaaattctatggtacatccaatatatttaagtgtaccggtacactcactctttaaattaatagttaaatgagttg 56104732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 688 - 807
Target Start/End: Original strand, 3763111 - 3763228
Alignment:
Q  688 attagacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaata 787  Q
    ||||| ||||||||| |||||||||||||||||||||||||   ||| || |||| ||||||||||| ||||||| |||||        |||||||||||    
T  3763111 attaggcaaattctatggtacatctaatatatttgagtgtatcggtacactcactttttaaattaatggttaaatgagttg--ctttttgaagaaaaata 3763208  T
Q  788 ttatttttaatcatttatat 807  Q
    |||||||  |||||||||||    
T  3763209 ttattttctatcatttatat 3763228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 694 - 768
Target Start/End: Complemental strand, 50383734 - 50383660
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    |||||| || |||||||| |||||||||||||||||  ||| || |||||||||||||||||||||||| |||||    
T  50383734 caaattatatggtacatccaatatatttgagtgtaccggtacactcactctttaaattaatagttaaatgagttg 50383660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 688 - 806
Target Start/End: Original strand, 43363323 - 43363439
Alignment:
Q  688 attagacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaata 787  Q
    ||||| |||||| || |||||| |||||||||||||||||| | |||||  | |||||||||||||||||||||| |||||        |||||||||||    
T  43363323 attaggcaaattttatggtacacctaatatatttgagtgtattggtatattcgctctttaaattaatagttaaatgagttg--ttttttgaagaaaaata 43363420  T
Q  788 ttatttttaatcatttata 806  Q
    |||||||| ||||| ||||    
T  43363421 ttattttttatcatctata 43363439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 692 - 768
Target Start/End: Original strand, 26117746 - 26117822
Alignment:
Q  692 gacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    |||||||| || |||||||| ||||||||||||||||  |||| || || ||||||||||||||||||||| |||||    
T  26117746 gacaaattttatggtacatccaatatatttgagtgtatcagtacactcattctttaaattaatagttaaatgagttg 26117822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 692 - 764
Target Start/End: Complemental strand, 32289312 - 32289240
Alignment:
Q  692 gacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataa 764  Q
    ||||||||||| | |||| ||||||||||||||| || | ||| || ||||||||||||||||||||||||||    
T  32289312 gacaaattctatgatacacctaatatatttgagtttattggtacactcactctttaaattaatagttaaataa 32289240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 694 - 807
Target Start/End: Complemental strand, 42177745 - 42177634
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattattt 793  Q
    ||||||||| |||||| | ||||||||||||||| |  |||||| |||||||||||||||| ||||||| |||||        |||||||||||||||||    
T  42177745 caaattctatggtacacccaatatatttgagtgttccggtatactcactctttaaattaatggttaaatgagttg--ttttttgaagaaaaatattattt 42177648  T
Q  794 ttaatcatttatat 807  Q
    |  |||||||||||    
T  42177647 tctatcatttatat 42177634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 694 - 806
Target Start/End: Complemental strand, 32846058 - 32845948
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattattt 793  Q
    ||||||||| |||||||| |||||||||||||||||| ||  || || ||||||||||||||  ||||| |||||        |||||||||||||||||    
T  32846058 caaattctatggtacatccaatatatttgagtgtactggtccactcattctttaaattaataaataaatgagttg--ttttttgaagaaaaatattattt 32845961  T
Q  794 ttaatcatttata 806  Q
    || ||||||||||    
T  32845960 tttatcatttata 32845948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 694 - 806
Target Start/End: Complemental strand, 54506277 - 54506167
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattattt 793  Q
    |||||||||||||||||| | |||||||||||||||  ||| || || |||||||||| |||||||||| |||||        |||||||||||||||||    
T  54506277 caaattctacggtacatccactatatttgagtgtaccggtacactcattctttaaattcatagttaaatgagttg--ttttttgaagaaaaatattattt 54506180  T
Q  794 ttaatcatttata 806  Q
    || || |||||||    
T  54506179 tttattatttata 54506167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 695 - 806
Target Start/End: Original strand, 423153 - 423262
Alignment:
Q  695 aaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattatttt 794  Q
    ||||||||  ||||||| ||||||||||||||||   ||| || || ||||||||||| |||||||||||||||        ||||||||||||||||||    
T  423153 aaattctatcgtacatccaatatatttgagtgtatcggtacacccattctttaaattagtagttaaataagttg--ttttttgaagaaaaatattatttt 423250  T
Q  795 taatcatttata 806  Q
    | ||||||||||    
T  423251 ttatcatttata 423262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 691 - 761
Target Start/End: Complemental strand, 24980349 - 24980279
Alignment:
Q  691 agacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaa 761  Q
    |||||||||||| |||||| | |||||||||||||||||   || || |||||||||||||||||||||||    
T  24980349 agacaaattctatggtacacccaatatatttgagtgtaccgatacacccactctttaaattaatagttaaa 24980279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 694 - 806
Target Start/End: Original strand, 31998728 - 31998840
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacac--actctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattat 791  Q
    ||||||||| ||||||   |||||||||||||||||  ||| ||||  ||||||||||||||||||||||||||| |        |||||||||||||||    
T  31998728 caaattctatggtacaatcaatatatttgagtgtaccggtacacacccactctttaaattaatagttaaataagtcg--ttttttgaagaaaaatattat 31998825  T
Q  792 ttttaatcatttata 806  Q
    |||| ||||||||||    
T  31998826 tttttatcatttata 31998840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 694 - 768
Target Start/End: Complemental strand, 53936917 - 53936843
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| |||||| | |||||||||||||||||  ||| || || ||||||||||||||||||||| |||||    
T  53936917 caaattctatggtacacccaatatatttgagtgtaccggtacacccattctttaaattaatagttaaatgagttg 53936843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 703 - 768
Target Start/End: Original strand, 43147503 - 43147568
Alignment:
Q  703 cggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| |||||||||||||||||  ||| || || ||||||||||||||||||||| |||||    
T  43147503 cggtacatccaatatatttgagtgtaccggtacacccattctttaaattaatagttaaatgagttg 43147568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 694 - 767
Target Start/End: Complemental strand, 48647426 - 48647353
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagtt 767  Q
    ||||||||| |||||| | |||||||||||||||||  ||| || ||||||||| |||||||||||||| ||||    
T  48647426 caaattctatggtacacccaatatatttgagtgtaccggtacactcactctttagattaatagttaaatgagtt 48647353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 714 - 806
Target Start/End: Original strand, 5337878 - 5337968
Alignment:
Q  714 atatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattatttttaatcatttata 806  Q
    |||||||||||||||  |||| || ||||||||||| ||||||||||||||||||         |||||||||||||||||| ||||||||||    
T  5337878 atatatttgagtgtatcagtacactcactctttaaactaatagttaaataagttgtttttta--aagaaaaatattattttttatcatttata 5337968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 694 - 807
Target Start/End: Original strand, 50607686 - 50607798
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattattt 793  Q
    |||||| || |||||| | |||||||||||||||||  ||| || |||||||||||||||| ||||||| |||||        |||||||||||||||||    
T  50607686 caaattttatggtacacccaatatatttgagtgtaccggtacacgcactctttaaattaatggttaaatgagttg-tttttttgaagaaaaatattattt 50607784  T
Q  794 ttaatcatttatat 807  Q
    |  |||||||||||    
T  50607785 tctatcatttatat 50607798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 691 - 807
Target Start/End: Complemental strand, 30348571 - 30348458
Alignment:
Q  691 agacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatatta 790  Q
    ||||||||| || | |||| |||||||||||||||||||  ||| || |||||||||||||||| ||||||| |||||        ||||||||||||||    
T  30348571 agacaaattttatgatacacctaatatatttgagtgtac-ggtacactcactctttaaattaatggttaaatgagttg--ctttttgaagaaaaatatta 30348475  T
Q  791 tttttaatcatttatat 807  Q
    ||||  |||||||||||    
T  30348474 ttttctatcatttatat 30348458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 694 - 806
Target Start/End: Original strand, 34828724 - 34828834
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattattt 793  Q
    ||||||||| | |||| | |||||||||||||| ||  |||||| || |||||||||||| |||||||| |||||        |||||||||||||||||    
T  34828724 caaattctatgatacacccaatatatttgagtgcaccggtatacccattctttaaattaacagttaaatgagttg--ttttttgaagaaaaatattattt 34828821  T
Q  794 ttaatcatttata 806  Q
    || ||||||||||    
T  34828822 tttatcatttata 34828834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 694 - 768
Target Start/End: Complemental strand, 27990944 - 27990870
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| |||||| ||| |||||||||||||||  ||| || || |||||||||| |||||||||| |||||    
T  27990944 caaattctatggtacacctactatatttgagtgtaccggtacactcattctttaaattcatagttaaatgagttg 27990870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 684 - 806
Target Start/End: Original strand, 56302825 - 56302946
Alignment:
Q  684 tataattagacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaa 783  Q
    |||||| || ||||||||| |||||| | ||||||||||| || ||  ||| || |||  ||||||||||||||||||||||||         |||||||    
T  56302825 tataataaggcaaattctatggtacacccaatatatttgaatgcaccggtacacccaccatttaaattaatagttaaataagtt-atttttttgaagaaa 56302923  T
Q  784 aatattatttttaatcatttata 806  Q
    |||||||||||| ||||||||||    
T  56302924 aatattattttttatcatttata 56302946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 715 - 768
Target Start/End: Original strand, 8256485 - 8256538
Alignment:
Q  715 tatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    |||||||||||||||||||| ||  |||||||||||| |||||||||| |||||    
T  8256485 tatatttgagtgtactagtacactaactctttaaattcatagttaaatgagttg 8256538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 715 - 768
Target Start/End: Original strand, 8269903 - 8269956
Alignment:
Q  715 tatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    |||||||||||||||||||| ||  |||||||||||| |||||||||| |||||    
T  8269903 tatatttgagtgtactagtacactaactctttaaattcatagttaaatgagttg 8269956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 695 - 768
Target Start/End: Complemental strand, 23059173 - 23059100
Alignment:
Q  695 aaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    |||||||| |||||| | ||||||||||||||||   ||| || |||||||||||||||| ||||||| |||||    
T  23059173 aaattctatggtacacccaatatatttgagtgtatcggtacactcactctttaaattaatcgttaaatgagttg 23059100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 687 - 804
Target Start/End: Complemental strand, 33492007 - 33491891
Alignment:
Q  687 aattagacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaat 786  Q
    |||||| |||||||||||||||| | |||||||||||||||||  ||| ||  || |||||| || |||| ||||| |||||        ||||||||||    
T  33492007 aattaggcaaattctacggtacacccaatatatttgagtgtaccggtacaccaaccctttaattttataggtaaatgagttg-tttttttgaagaaaaat 33491909  T
Q  787 attatttttaatcattta 804  Q
    ||||||||| ||||||||    
T  33491908 attattttttatcattta 33491891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 706 - 807
Target Start/End: Complemental strand, 36631427 - 36631328
Alignment:
Q  706 tacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattatttttaatcatttat 805  Q
    |||| ||||||||||||||||||||  || || | |||||||||||||| ||||||| |||||        ||||||||||||||||||  |||||||||    
T  36631427 tacacctaatatatttgagtgtactgttacactcgctctttaaattaatggttaaatgagttg--ttttttgaagaaaaatattattttctatcatttat 36631330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 694 - 806
Target Start/End: Complemental strand, 5971104 - 5970994
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattattt 793  Q
    |||||| || |||||||| ||||||||||| ||||   ||| |  |||||||||||||||||||||||||| |||        || ||||||||||||||    
T  5971104 caaattgtatggtacatcgaatatatttgattgtagcggtacatccactctttaaattaatagttaaataaattg--ttttttgaggaaaaatattattt 5971007  T
Q  794 ttaatcatttata 806  Q
    || ||||||||||    
T  5971006 tttatcatttata 5970994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 694 - 806
Target Start/End: Complemental strand, 9356787 - 9356677
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattattt 793  Q
    ||||||||| |||||| | ||||||||| |||||| | ||| |  || ||||||||||||||||||||| |||||        |||||||||||||||||    
T  9356787 caaattctatggtacacccaatatattttagtgtattggtaaattcagtctttaaattaatagttaaatgagttg--ttttttgaagaaaaatattattt 9356690  T
Q  794 ttaatcatttata 806  Q
    || ||||| ||||    
T  9356689 tttatcatctata 9356677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 768
Target Start/End: Complemental strand, 27761810 - 27761731
Alignment:
Q  689 ttagacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    |||| ||||||||| |||||| |||||||||||||||||||  ||| ||  | |||||||||||| | |||||| |||||    
T  27761810 ttaggcaaattctatggtacacctaatatatttgagtgtaccggtacacttattctttaaattaacaattaaatgagttg 27761731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 694 - 768
Target Start/End: Complemental strand, 45693029 - 45692955
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| |||||| | | |||||||||||||||  ||| || |||||||||| || |||||||||| |||||    
T  45693029 caaattctatggtacacccactatatttgagtgtaccggtacactcactctttaacttcatagttaaatgagttg 45692955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 767
Target Start/End: Original strand, 126584 - 126657
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagtt 767  Q
    ||||||||||||||||   | |||||||||||||||  ||| |  ||||||||||||| |||||||||| ||||    
T  126584 caaattctacggtacactcactatatttgagtgtaccggtacattcactctttaaattcatagttaaatgagtt 126657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 767
Target Start/End: Original strand, 4720490 - 4720563
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagtt 767  Q
    ||||||||| |||||| | |  ||||||||||||||  ||| || ||||||||||||| |||||||||| ||||    
T  4720490 caaattctatggtacacccacgatatttgagtgtaccggtagacccactctttaaattcatagttaaatgagtt 4720563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 9e-26; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 689 - 806
Target Start/End: Original strand, 38260799 - 38260914
Alignment:
Q  689 ttagacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatat 788  Q
    |||| ||||||||| ||||||||||||||||||||||||||  ||| || ||||||||||||||||||||||||||||||        ||||||||||||    
T  38260799 ttaggcaaattctatggtacatctaatatatttgagtgtaccggtacacccactctttaaattaatagttaaataagttg--ttttttgaagaaaaatat 38260896  T
Q  789 tatttttaatcatttata 806  Q
    ||||||| ||||||||||    
T  38260897 tattttttatcatttata 38260914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 694 - 806
Target Start/End: Complemental strand, 35874343 - 35874233
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattattt 793  Q
    ||||||||| |||||| | |||||||||||||||| | ||| || ||||||||||||||||||||||||||||||        |||||||||||||||||    
T  35874343 caaattctatggtacacccaatatatttgagtgtattggtacactcactctttaaattaatagttaaataagttg--ttttttgaagaaaaatattattt 35874246  T
Q  794 ttaatcatttata 806  Q
    || ||||||||||    
T  35874245 tttatcatttata 35874233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 694 - 806
Target Start/End: Original strand, 52180236 - 52180346
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattattt 793  Q
    |||||| || ||||||||||||||||||||||||||  ||| || |||| |||||||||||||||||||||||||        |||||||||||||||||    
T  52180236 caaattttatggtacatctaatatatttgagtgtaccggtacacccactatttaaattaatagttaaataagttg--ttttttgaagaaaaatattattt 52180333  T
Q  794 ttaatcatttata 806  Q
    || ||||||||||    
T  52180334 tttatcatttata 52180346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 694 - 806
Target Start/End: Original strand, 51056199 - 51056308
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattattt 793  Q
    ||||||||| |||||| |||||||||||||||||||  ||| || |||||||||||||||||||||||||||||         |||||||||||||||||    
T  51056199 caaattctatggtacacctaatatatttgagtgtaccggtacac-cactctttaaattaatagttaaataagtt--attttttgaagaaaaatattattt 51056295  T
Q  794 ttaatcatttata 806  Q
    || ||||||||||    
T  51056296 tttatcatttata 51056308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 694 - 767
Target Start/End: Complemental strand, 45622889 - 45622816
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagtt 767  Q
    ||||||||| |||||||| | ||||||||||||||| |||| || ||||||||||||| |||||||||||||||    
T  45622889 caaattctatggtacatccactatatttgagtgtaccagtacactcactctttaaattcatagttaaataagtt 45622816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 694 - 806
Target Start/End: Complemental strand, 34038569 - 34038459
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattattt 793  Q
    ||||||||| |||||||| |||||||||||||||| | ||| || |||| ||||||||||||||||||| |||||        |||||||||||||||||    
T  34038569 caaattctatggtacatccaatatatttgagtgtattggtacactcactttttaaattaatagttaaatgagttg--ttttttgaagaaaaatattattt 34038472  T
Q  794 ttaatcatttata 806  Q
    || ||||| ||||    
T  34038471 tttatcatctata 34038459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 694 - 768
Target Start/End: Complemental strand, 48977281 - 48977207
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| ||||||   |||||||||||||||||  ||| || ||||||||||||||||||||||||||||||    
T  48977281 caaattctatggtacactcaatatatttgagtgtaccggtacacccactctttaaattaatagttaaataagttg 48977207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 694 - 768
Target Start/End: Complemental strand, 51787873 - 51787799
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| |||||||| |||||||||||||||||  ||| || || ||||||||||||||||||||| |||||    
T  51787873 caaattctatggtacatccaatatatttgagtgtaccggtacacccattctttaaattaatagttaaatgagttg 51787799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 694 - 767
Target Start/End: Complemental strand, 2249971 - 2249898
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagtt 767  Q
    ||||||||| |||||||| | |||||||||||||| | |||||| ||||||||||||| |||||||||| ||||    
T  2249971 caaattctatggtacatccactatatttgagtgtattggtatactcactctttaaattcatagttaaatgagtt 2249898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 694 - 767
Target Start/End: Original strand, 24381318 - 24381391
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagtt 767  Q
    ||||||||| |||||| |||||| ||||||||||||  ||| || |||||||||||||||||||||||| ||||    
T  24381318 caaattctatggtacacctaatagatttgagtgtaccggtacactcactctttaaattaatagttaaatgagtt 24381391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 695 - 768
Target Start/End: Complemental strand, 52346005 - 52345932
Alignment:
Q  695 aaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||  ||||| | ||||||||||||||||| |||| || |||||||||||||||||||||||| |||||    
T  52346005 aaattctattgtacacccaatatatttgagtgtaccagtacacccactctttaaattaatagttaaatgagttg 52345932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 692 - 760
Target Start/End: Complemental strand, 46362427 - 46362359
Alignment:
Q  692 gacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaa 760  Q
    |||||||| || |||||||| |||||||||||||||||||||| || || ||||||||||||| |||||    
T  46362427 gacaaattttatggtacatccaatatatttgagtgtactagtacacccattctttaaattaatggttaa 46362359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 694 - 761
Target Start/End: Complemental strand, 12105564 - 12105497
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaa 761  Q
    ||||||||| |||||| | ||||||||||||||||| | || || |||||||||||||||||||||||    
T  12105564 caaattctatggtacacccaatatatttgagtgtaccaatacacccactctttaaattaatagttaaa 12105497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 694 - 806
Target Start/End: Complemental strand, 24230975 - 24230866
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattattt 793  Q
    ||||||||| |||||||| ||||||||||||||||   ||| || |||  || ||||||||||||||||||||||        |||||||||||||||||    
T  24230975 caaattctatggtacatccaatatatttgagtgtatcggtacacccaccattcaaattaatagttaaataagttg---tttttgaagaaaaatattattt 24230879  T
Q  794 ttaatcatttata 806  Q
    || ||||||||||    
T  24230878 tttatcatttata 24230866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 694 - 806
Target Start/End: Original strand, 44263648 - 44263759
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattattt 793  Q
    ||||||||| |||||| | |||||||||||||||| |  || || | |||||||||||||||||||||| |||||        |||||||||||||||||    
T  44263648 caaattctatggtacacccaatatatttgagtgtattgatacactcgctctttaaattaatagttaaatgagttg-tttttttgaagaaaaatattattt 44263746  T
Q  794 ttaatcatttata 806  Q
    || ||||||||||    
T  44263747 tttatcatttata 44263759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 694 - 768
Target Start/End: Complemental strand, 17554222 - 17554148
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| |||||| | |||||||||||||||||  ||| || |||||||||||||||| ||||||| |||||    
T  17554222 caaattctatggtacacccaatatatttgagtgtaccggtacactcactctttaaattaatggttaaatgagttg 17554148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 694 - 768
Target Start/End: Original strand, 38717756 - 38717830
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| |||||| | | |||||||||||||||||||| ||  |||||||||||| |||||||||| |||||    
T  38717756 caaattctatggtacacccactatatttgagtgtactagtacactaactctttaaattcatagttaaatgagttg 38717830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 694 - 768
Target Start/End: Complemental strand, 42275741 - 42275667
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    |||||| || |||||||| |||||||||||||||| | |||||| || | ||||||||||||||||||| |||||    
T  42275741 caaattttatggtacatccaatatatttgagtgtattggtatactcattttttaaattaatagttaaatgagttg 42275667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 695 - 768
Target Start/End: Complemental strand, 6329648 - 6329576
Alignment:
Q  695 aaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||| || |||||||| |||||||||||||||||||||| |  ||||||||||||| |||||||||| |||||    
T  6329648 aaattttagggtacatccaatatatttgagtgtactagtacattcactctttaaatt-atagttaaatgagttg 6329576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 694 - 807
Target Start/End: Complemental strand, 477839 - 477728
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattattt 793  Q
    ||||||||| |||||| | ||||||||||||||||   ||| || |||||||||||||||| ||||||| |||||        |||||||||||||||||    
T  477839 caaattctatggtacacccaatatatttgagtgtatcggtacactcactctttaaattaatggttaaatgagttg--ttttttgaagaaaaatattattt 477742  T
Q  794 ttaatcatttatat 807  Q
    |  |||||||||||    
T  477741 tctatcatttatat 477728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 712 - 768
Target Start/End: Original strand, 30896833 - 30896889
Alignment:
Q  712 taatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    |||||||||||||||||   ||||||  |||||||||||||||||||||||||||||    
T  30896833 taatatatttgagtgtatcggtatacttactctttaaattaatagttaaataagttg 30896889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 694 - 762
Target Start/End: Original strand, 3399150 - 3399220
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatac--acactctttaaattaatagttaaat 762  Q
    ||||||||| |||||| ||||||||||||||||| |  ||||||   ||||||||||||||||||||||||    
T  3399150 caaattctatggtacacctaatatatttgagtgtgccggtatactaccactctttaaattaatagttaaat 3399220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 689 - 768
Target Start/End: Original strand, 6965929 - 6966008
Alignment:
Q  689 ttagacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    |||| ||||||||| |||||| | | |||||||||||||||||||| ||  ||||||||| || |||||||||| |||||    
T  6965929 ttaggcaaattctatggtacacccactatatttgagtgtactagtacactaactctttaatttcatagttaaatgagttg 6966008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 694 - 768
Target Start/End: Complemental strand, 6526833 - 6526759
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| |||||| | |||||||||||||||||   || || ||||| |||||||||||||||||| |||||    
T  6526833 caaattctatggtacacccaatatatttgagtgtaccgatacactcactccttaaattaatagttaaatgagttg 6526759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 687 - 761
Target Start/End: Complemental strand, 14153094 - 14153020
Alignment:
Q  687 aattagacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaa 761  Q
    |||||| ||||||||| ||||||   |||||||||||||||||  ||| || |||| ||||||||||||||||||    
T  14153094 aattaggcaaattctatggtacactcaatatatttgagtgtacatgtacacccactttttaaattaatagttaaa 14153020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 689 - 767
Target Start/End: Complemental strand, 25702867 - 25702789
Alignment:
Q  689 ttagacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagtt 767  Q
    |||| |||||||||  ||||||  |||||||||||||||||  ||| || ||||||||| |||||||||||||| ||||    
T  25702867 ttaggcaaattctatagtacattcaatatatttgagtgtaccggtacactcactctttagattaatagttaaatgagtt 25702789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 694 - 768
Target Start/End: Complemental strand, 32710149 - 32710075
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| |||||||| |||||||||||||||||  ||| || |||| ||||||| ||| ||||||| |||||    
T  32710149 caaattctatggtacatccaatatatttgagtgtaccggtacactcactttttaaatcaatggttaaatgagttg 32710075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 695 - 768
Target Start/End: Original strand, 30571009 - 30571082
Alignment:
Q  695 aaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    |||||||| |||||| |||||||||||||||||||   || |  ||||||||||||||||| ||||| ||||||    
T  30571009 aaattctatggtacacctaatatatttgagtgtaccgttacatccactctttaaattaataattaaaaaagttg 30571082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 695 - 768
Target Start/End: Original strand, 46234831 - 46234904
Alignment:
Q  695 aaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    |||||||| |||||| | |||||||||||||||||   || || |||||||||||||||| ||||||| |||||    
T  46234831 aaattctatggtacacccaatatatttgagtgtaccgatacactcactctttaaattaatggttaaatgagttg 46234904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 694 - 762
Target Start/End: Original strand, 48760127 - 48760195
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaat 762  Q
    ||||||||| |||||| | | |||||||||||||| ||||| ||  |||||||||||| ||||||||||    
T  48760127 caaattctatggtacacccactatatttgagtgtattagtacactaactctttaaattcatagttaaat 48760195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 686 - 729
Target Start/End: Complemental strand, 25082162 - 25082119
Alignment:
Q  686 taattagacaaattctacggtacatctaatatatttgagtgtac 729  Q
    ||||| |||||||||||||||||| |||| ||||||||||||||    
T  25082162 taatttgacaaattctacggtacacctaacatatttgagtgtac 25082119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 768
Target Start/End: Original strand, 47544292 - 47544371
Alignment:
Q  689 ttagacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    |||| ||||||||| |||||| | | ||||||||||||||   ||| || ||||||||||||| |||||||||| |||||    
T  47544292 ttaggcaaattctatggtacacccactatatttgagtgtaacggtacactcactctttaaattcatagttaaatgagttg 47544371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 694 - 761
Target Start/End: Original strand, 47693208 - 47693275
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaa 761  Q
    ||||||||| |||||| | |||||||||||||||||   || |  |||||||||||||||||||||||    
T  47693208 caaattctatggtacacccaatatatttgagtgtaccgatacatccactctttaaattaatagttaaa 47693275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 694 - 768
Target Start/End: Complemental strand, 24003825 - 24003751
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| |||||||| | |||||||||||||||  ||| || || | |||||||| |||||||||| |||||    
T  24003825 caaattctatggtacatccactatatttgagtgtaccggtacactcattatttaaattcatagttaaatgagttg 24003751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 694 - 768
Target Start/End: Complemental strand, 30321296 - 30321222
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| |||||| | | |||||||||||||||  |||||| |||||||| | || |||||||||| |||||    
T  30321296 caaattctatggtacacccattatatttgagtgtaccggtatactcactcttttacttcatagttaaatgagttg 30321222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 674 - 767
Target Start/End: Original strand, 8396339 - 8396432
Alignment:
Q  674 aaatcatgtttataattagacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagtt 767  Q
    ||||| |||| |||| ||| |||||||||| |||||   | |||||||||||||||  ||| |  ||||||||||||| |||||||||| ||||    
T  8396339 aaatcgtgttaataaataggcaaattctacagtacactcactatatttgagtgtaccggtacattcactctttaaattcatagttaaatgagtt 8396432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 767
Target Start/End: Complemental strand, 31076015 - 31075942
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagtt 767  Q
    ||||||||| |||||| | |||||||||||||||||  ||| || || || ||||||||||| |||||| ||||    
T  31076015 caaattctatggtacacccaatatatttgagtgtaccggtacacccattcattaaattaataattaaatgagtt 31075942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 768
Target Start/End: Original strand, 32805735 - 32805808
Alignment:
Q  695 aaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    |||||||| |||||||| | ||||||| |||||| | ||| || ||||||||||||| | |||||||| |||||    
T  32805735 aaattctatggtacatccactatatttaagtgtattggtacactcactctttaaattcaaagttaaatgagttg 32805808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 694 - 807
Target Start/End: Original strand, 30891280 - 30891393
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattattt 793  Q
    ||||||||| |||||||| |||||||||||||||||| ||| || |||||||||||||||| ||||||| |||||        |||||||||||||||||    
T  30891280 caaattctatggtacatccaatatatttgagtgtactggtacactcactctttaaattaatggttaaatgagttgttttttttgaagaaaaatattattt 30891379  T
Q  794 ttaatcatttatat 807  Q
    |  |||||||||||    
T  30891380 tctatcatttatat 30891393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 689 - 807
Target Start/End: Original strand, 35357698 - 35357814
Alignment:
Q  689 ttagacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatat 788  Q
    |||| ||||||||| |||||||| |||||||||||||||||  ||| || |||||||||||||||| ||||||| |||||        ||||||||||||    
T  35357698 ttaggcaaattctatggtacatccaatatatttgagtgtaccggtacactcactctttaaattaatggttaaatgagttg--ttttttgaagaaaaatat 35357795  T
Q  789 tatttttaatcatttatat 807  Q
    ||||||  |||||||||||    
T  35357796 tattttctatcatttatat 35357814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 694 - 761
Target Start/End: Complemental strand, 26605459 - 26605392
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaa 761  Q
    ||||||||| |||||| | ||||||||||||||||| | ||||| |||||||||||||||||||||||    
T  26605459 caaattctatggtacacccaatatatttgagtgtaccaatatacccactctttaaattaatagttaaa 26605392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 695 - 806
Target Start/End: Original strand, 1806484 - 1806593
Alignment:
Q  695 aaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattatttt 794  Q
    |||||||| ||||||   |||||||||||||||||  ||| ||  |||||||||||||||||||||||||||||        ||||||||||||||||||    
T  1806484 aaattctatggtacactcaatatatttgagtgtaccggtacacctactctttaaattaatagttaaataagttg--ttttttgaagaaaaatattatttt 1806581  T
Q  795 taatcatttata 806  Q
    | ||||||||||    
T  1806582 ttatcatttata 1806593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 694 - 768
Target Start/End: Complemental strand, 5583268 - 5583194
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| |||||| | |||||||||||||||||  ||| || |||||||||||||||||||||||| |||||    
T  5583268 caaattctatggtacacccaatatatttgagtgtaccggtaaactcactctttaaattaatagttaaatgagttg 5583194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 695 - 805
Target Start/End: Original strand, 3214521 - 3214629
Alignment:
Q  695 aaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattatttt 794  Q
    ||||| || |||||| | ||||||||| ||||||| |||| ||  ||||||||||||||||||||||||||||         ||||||||||||||||||    
T  3214521 aaattatatggtacacccaatatatttaagtgtaccagtacacctactctttaaattaatagttaaataagtt--attttttgaagaaaaatattatttt 3214618  T
Q  795 taatcatttat 805  Q
    | |||||||||    
T  3214619 ttatcatttat 3214629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 694 - 768
Target Start/End: Original strand, 18519916 - 18519990
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| |||||||| | |||||||||||||||  ||| || ||||||||||||| |||||||||| |||||    
T  18519916 caaattctatggtacatccactatatttgagtgtaccggtacactcactctttaaattcatagttaaatgagttg 18519990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 691 - 806
Target Start/End: Complemental strand, 41047250 - 41047136
Alignment:
Q  691 agacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatatta 790  Q
    |||||||||||| ||||||  |||||||||| ||| || | ||| ||  ||||||||||||||||||||||| |||||        ||||||||||||||    
T  41047250 agacaaattctatggtacaaataatatatttaagtttattggtacacttactctttaaattaatagttaaattagttg-tttttttgaagaaaaatatta 41047152  T
Q  791 tttttaatcatttata 806  Q
    ||||| ||||||||||    
T  41047151 ttttttatcatttata 41047136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 694 - 768
Target Start/End: Complemental strand, 47369624 - 47369550
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| |||||| | |||||||||||||||||   || || ||||||||||||| ||||||||||||||||    
T  47369624 caaattctatggtacacccaatatatttgagtgtaccgatacactcactctttaaattcatagttaaataagttg 47369550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 694 - 767
Target Start/End: Original strand, 30076661 - 30076734
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagtt 767  Q
    ||||||||| |||||| | | |||||||||||||||||||| ||  |||||||||||| |||||||||| ||||    
T  30076661 caaattctatggtacacccactatatttgagtgtactagtacactaactctttaaattcatagttaaatgagtt 30076734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 691 - 768
Target Start/End: Complemental strand, 32529589 - 32529512
Alignment:
Q  691 agacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| ||  ||||||||||||||||||||||||  |||| ||  ||||||||||||||| ||||||| |||||    
T  32529589 agacaaattatatagtacatctaatatatttgagtgtatcagtacacctactctttaaattaatggttaaatgagttg 32529512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 694 - 767
Target Start/End: Complemental strand, 41968827 - 41968754
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagtt 767  Q
    ||||||||| |||||| ||||||||||||||||||   ||| || |||||||||||||||| ||||||| ||||    
T  41968827 caaattctatggtacacctaatatatttgagtgtatcggtacactcactctttaaattaatggttaaatgagtt 41968754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 694 - 807
Target Start/End: Complemental strand, 6791842 - 6791730
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattattt 793  Q
    ||||||||| |||||| | ||||||||||||||||   ||| || |||||||||||||||| ||||||| |||||        |||||||||||||||||    
T  6791842 caaattctatggtacacccaatatatttgagtgtatcggtacactcactctttaaattaatggttaaatgagttg-tttttttgaagaaaaatattattt 6791744  T
Q  794 ttaatcatttatat 807  Q
    |  |||||||||||    
T  6791743 tctatcatttatat 6791730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 694 - 807
Target Start/End: Original strand, 15954133 - 15954244
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattattt 793  Q
    ||||||||| |||||||| |||||||||||||||||  |||||| || | ||||||| ||| ||||||| |||||        |||||||||||||||||    
T  15954133 caaattctatggtacatccaatatatttgagtgtaccggtatactcattatttaaatcaatggttaaatgagttg--ttttttgaagaaaaatattattt 15954230  T
Q  794 ttaatcatttatat 807  Q
    |  |||||||||||    
T  15954231 tctatcatttatat 15954244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 694 - 806
Target Start/End: Original strand, 38665890 - 38666001
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattattt 793  Q
    |||||||||| ||||||| | |||||||||||||||  ||| ||  |||||||||||| || ||||||| |||||        |||||||||||||||||    
T  38665890 caaattctacagtacatccactatatttgagtgtaccggtacacttactctttaaattcatggttaaatgagttg-tttttttgaagaaaaatattattt 38665988  T
Q  794 ttaatcatttata 806  Q
    || ||||||||||    
T  38665989 tttatcatttata 38666001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 695 - 762
Target Start/End: Complemental strand, 46291503 - 46291436
Alignment:
Q  695 aaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaat 762  Q
    ||||| || |||||| | |||||||||||||||||  ||| || ||||||||||||||||||||||||    
T  46291503 aaattatatggtacacccaatatatttgagtgtaccggtacacgcactctttaaattaatagttaaat 46291436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 694 - 768
Target Start/End: Original strand, 15715906 - 15715980
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| |||||| | | |||||||||||||||  ||| || ||||||||||||| |||||||||| |||||    
T  15715906 caaattctatggtacacccactatatttgagtgtaccggtacacccactctttaaattcatagttaaatgagttg 15715980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 694 - 768
Target Start/End: Complemental strand, 17307004 - 17306930
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    |||||| || |||||| ||||||||||||||||||   ||||||  | ||||||||||||||||||||| |||||    
T  17307004 caaattttatggtacacctaatatatttgagtgtatcggtatacttattctttaaattaatagttaaatgagttg 17306930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 694 - 768
Target Start/End: Complemental strand, 24953333 - 24953259
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| |||||| | | |||||||||||||||  ||| || ||||||||||||| |||||||||| |||||    
T  24953333 caaattctatggtacacccactatatttgagtgtaccggtacactcactctttaaattcatagttaaatgagttg 24953259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 694 - 806
Target Start/End: Complemental strand, 26414016 - 26413902
Alignment:
Q  694 caaattctacggtacatctaatatatttga----gtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatatt 789  Q
    |||||| ||||||| | |||||||||||||    |||||| |||| || |||| |||||||||||||||||||||||||        |||||||| ||||    
T  26414016 caaattatacggtatacctaatatatttgatcgagtgtaccagtacacccactttttaaattaatagttaaataagttg--ttttttgaagaaaattatt 26413919  T
Q  790 atttttaatcatttata 806  Q
    |||||| ||||||||||    
T  26413918 attttttatcatttata 26413902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 695 - 768
Target Start/End: Complemental strand, 23110834 - 23110761
Alignment:
Q  695 aaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||| || |||||||| | |||||||||||||||  ||| || ||||||||||||| |||||||||| |||||    
T  23110834 aaattttatggtacatccactatatttgagtgtaccggtacactcactctttaaatttatagttaaatgagttg 23110761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 713 - 807
Target Start/End: Complemental strand, 35291712 - 35291620
Alignment:
Q  713 aatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattatttttaatcatttatat 807  Q
    |||||||||||||||||  ||| || |||||||||||||||| ||||||| |||||        ||||||||||||||||||  |||||||||||    
T  35291712 aatatatttgagtgtaccggtacactcactctttaaattaatggttaaatgagttg--ttttttgaagaaaaatattattttctatcatttatat 35291620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 717 - 768
Target Start/End: Complemental strand, 11750803 - 11750752
Alignment:
Q  717 tatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    |||||||||||||| ||| || ||||||||||||| |||||||||| |||||    
T  11750803 tatttgagtgtactggtacactcactctttaaatttatagttaaatgagttg 11750752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 683 - 734
Target Start/End: Original strand, 24148789 - 24148839
Alignment:
Q  683 ttataattagacaaattctacggtacatctaatatatttgagtgtactagta 734  Q
    ||||||| |||||||||||| |||||||||||||| ||||||||||| ||||    
T  24148789 ttataataagacaaattctatggtacatctaatat-tttgagtgtaccagta 24148839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 704 - 767
Target Start/End: Complemental strand, 45232444 - 45232381
Alignment:
Q  704 ggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagtt 767  Q
    |||||| | |||||||||||||||||| ||| || || ||||||| ||||||||||||| ||||    
T  45232444 ggtacacccaatatatttgagtgtactggtacacccattctttaatttaatagttaaatgagtt 45232381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 694 - 768
Target Start/End: Original strand, 24812081 - 24812155
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| ||||||   | |||||||||||||||  ||| || ||||||||||||| |||||||||| |||||    
T  24812081 caaattctatggtacactcactatatttgagtgtaccggtacactcactctttaaatttatagttaaatgagttg 24812155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 767
Target Start/End: Complemental strand, 28265158 - 28265085
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagtt 767  Q
    ||||||||| |||||| | | |||||||||||| ||  ||| || ||||||||||||| |||||||||| ||||    
T  28265158 caaattctatggtacacccactatatttgagtgcaccggtacactcactctttaaattcatagttaaatgagtt 28265085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 6e-21; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 694 - 806
Target Start/End: Original strand, 4509432 - 4509542
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattattt 793  Q
    ||||||||| |||||| |||||||||||||||||||  ||| || |||||||||||||||||||||||||||||         |||||||||||||||||    
T  4509432 caaattctatggtacacctaatatatttgagtgtaccggtacacccactctttaaattaatagttaaataagtt--attttttgaagaaaaatattattt 4509529  T
Q  794 ttaatcatttata 806  Q
    || ||||||||||    
T  4509530 tttatcatttata 4509542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 694 - 806
Target Start/End: Complemental strand, 243291 - 243181
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattattt 793  Q
    |||||| || |||||||| |||||||||||||| ||  ||| ||||| ||||||||||||||||||||| |||||        |||||||||||||||||    
T  243291 caaattatatggtacatccaatatatttgagtgcaccggtacacacattctttaaattaatagttaaatgagttg--ttttttgaagaaaaatattattt 243194  T
Q  794 ttaatcatttata 806  Q
    || ||||||||||    
T  243193 tttatcatttata 243181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 694 - 768
Target Start/End: Complemental strand, 3141444 - 3141370
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| |||||| ||| |||||||||||||||  ||| || ||||||||||||| ||||||||||||||||    
T  3141444 caaattctatggtacacctactatatttgagtgtaccggtacactcactctttaaattcatagttaaataagttg 3141370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 688 - 768
Target Start/End: Complemental strand, 8310277 - 8310197
Alignment:
Q  688 attagacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||||||||| |||| || ||||||||||||||||||   || || || ||||||||||||||||||||| |||||    
T  8310277 attagacaaattctatggtatatttaatatatttgagtgtaccgatacactcattctttaaattaatagttaaatgagttg 8310197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 689 - 768
Target Start/End: Original strand, 1244812 - 1244891
Alignment:
Q  689 ttagacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    |||| ||||||||| |||||||| | |||||||||||||||  ||| || ||||||||||||| |||||||||| |||||    
T  1244812 ttaggcaaattctatggtacatccactatatttgagtgtaccggtacactcactctttaaattcatagttaaatgagttg 1244891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 694 - 768
Target Start/End: Original strand, 9661754 - 9661828
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| |||||| | |||||||||||||||||  ||| || || ||||||||||||||||||||| |||||    
T  9661754 caaattctatggtacacccaatatatttgagtgtaccggtacacccattctttaaattaatagttaaatgagttg 9661828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 736 - 806
Target Start/End: Complemental strand, 11763536 - 11763468
Alignment:
Q  736 acacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattatttttaatcatttata 806  Q
    |||||||||||||||||||||||||||||||||        ||||||||||||||||||| ||||||||||    
T  11763536 acacactctttaaattaatagttaaataagttg--ttttttgaagaaaaatattatttttgatcatttata 11763468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 694 - 767
Target Start/End: Complemental strand, 8549959 - 8549886
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagtt 767  Q
    ||||||||| |||||| | ||||||||||||||||   ||| || |||||||||||||||| ||||||| ||||    
T  8549959 caaattctatggtacacccaatatatttgagtgtatcggtacactcactctttaaattaatggttaaatgagtt 8549886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 714 - 806
Target Start/End: Original strand, 33574020 - 33574110
Alignment:
Q  714 atatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattatttttaatcatttata 806  Q
    |||||||||||| |||  ||| ||  ||||||||||||||||||||||||||||         ||||||||||||||||||| ||||||||||    
T  33574020 atatatttgagtataccggtacacctactctttaaattaatagttaaataagtt--tttttttgaagaaaaatattattttttatcatttata 33574110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 694 - 768
Target Start/End: Original strand, 4576387 - 4576461
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| |||||| | ||||||||||| |||||  ||| ||  ||||||||||||||| ||||||| |||||    
T  4576387 caaattctatggtacagccaatatatttgaatgtaccggtacacttactctttaaattaatggttaaatgagttg 4576461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 694 - 768
Target Start/End: Original strand, 9686778 - 9686852
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| ||||||   ||||||||||||||||  |||| || |||||||||||||||  ||||||| |||||    
T  9686778 caaattctatggtacactcaatatatttgagtgtatcagtacactcactctttaaattaacggttaaatgagttg 9686852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 694 - 768
Target Start/End: Original strand, 23416496 - 23416570
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| |||||| | | ||||||||||||||| |||| || ||| ||||||||| |||| ||||| |||||    
T  23416496 caaattctatggtacacccactatatttgagtgtaccagtacactcacactttaaattcatagctaaatgagttg 23416570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 6e-21; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 694 - 806
Target Start/End: Original strand, 13118803 - 13118913
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattattt 793  Q
    ||||||||| |||||||||||||||||| |||||||  ||| || |||||||||||||||||||||||||||||         |||||||||||||||||    
T  13118803 caaattctatggtacatctaatatatttaagtgtaccggtacactcactctttaaattaatagttaaataagtt--attttttgaagaaaaatattattt 13118900  T
Q  794 ttaatcatttata 806  Q
    || ||||||||||    
T  13118901 tttatcatttata 13118913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 694 - 767
Target Start/End: Original strand, 25929562 - 25929635
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagtt 767  Q
    ||||||||| |||||| | |||||||||||||||||  |||||| |||||||||||||||||||||||||||||    
T  25929562 caaattctatggtacacccaatatatttgagtgtacgggtatacccactctttaaattaatagttaaataagtt 25929635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 691 - 768
Target Start/End: Original strand, 701940 - 702017
Alignment:
Q  691 agacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    |||||||||||| |||||| ||||||||| |||||| ||| ||| || |||||||||||||||||||||||| |||||    
T  701940 agacaaattctatggtacacctaatatatatgagtgcactcgtacactcactctttaaattaatagttaaatgagttg 702017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 689 - 807
Target Start/End: Original strand, 29959876 - 29959992
Alignment:
Q  689 ttagacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatat 788  Q
    |||| ||||||||| |||||| ||||||||||||||||||  |||| || |||||||||||||||| ||||||| |||||        ||||||||||||    
T  29959876 ttaggcaaattctatggtacacctaatatatttgagtgtatcagtacactcactctttaaattaatggttaaatgagttg--tattttgaagaaaaatat 29959973  T
Q  789 tatttttaatcatttatat 807  Q
    ||||||  |||||||||||    
T  29959974 tattttctatcatttatat 29959992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 694 - 807
Target Start/End: Original strand, 13126982 - 13127093
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattattt 793  Q
    ||||||||| |||||||||||||||||| |||||||  ||||||  ||||||||||||||| ||||||| |||||        |||||||||||||||||    
T  13126982 caaattctatggtacatctaatatatttaagtgtaccggtatacttactctttaaattaatggttaaatgagttg--ctttttgaagaaaaatattattt 13127079  T
Q  794 ttaatcatttatat 807  Q
    |  |||||||||||    
T  13127080 tctatcatttatat 13127093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 692 - 807
Target Start/End: Original strand, 33210370 - 33210483
Alignment:
Q  692 gacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattat 791  Q
    ||||||||||| |||||| | |||||||||||||||||  ||| || |||||||||||||||| ||||||| |||||        |||||||||||||||    
T  33210370 gacaaattctatggtacacccaatatatttgagtgtaccggtacactcactctttaaattaatggttaaatgagttg--tcttttgaagaaaaatattat 33210467  T
Q  792 ttttaatcatttatat 807  Q
    |||  |||||||||||    
T  33210468 tttctatcatttatat 33210483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 689 - 762
Target Start/End: Original strand, 4616697 - 4616770
Alignment:
Q  689 ttagacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaat 762  Q
    |||| |||||| || ||||||||||||||||||||||||||  ||| || || |||||||||||||||||||||    
T  4616697 ttaggcaaattatatggtacatctaatatatttgagtgtaccggtacactcattctttaaattaatagttaaat 4616770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 695 - 767
Target Start/End: Complemental strand, 42487009 - 42486937
Alignment:
Q  695 aaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagtt 767  Q
    |||||||| |||||| |||||||||||||||||||   || || |||| ||||||||||||||||||||||||    
T  42487009 aaattctatggtacaactaatatatttgagtgtaccgctacacccactttttaaattaatagttaaataagtt 42486937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 691 - 761
Target Start/End: Original strand, 3425790 - 3425860
Alignment:
Q  691 agacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaa 761  Q
    ||||||||| || |||||||| |||||||||||||||||   |||||  ||||||||||||||||||||||    
T  3425790 agacaaattatatggtacatccaatatatttgagtgtaccgctatacctactctttaaattaatagttaaa 3425860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 694 - 768
Target Start/End: Original strand, 38293625 - 38293699
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| |||||||| |||||||||||||||   | || || |||||||||||||||||||||||| |||||    
T  38293625 caaattctatggtacatccaatatatttgagtgtgtcaatacactcactctttaaattaatagttaaatgagttg 38293699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 695 - 768
Target Start/End: Complemental strand, 3024566 - 3024493
Alignment:
Q  695 aaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||| || |||||||| | |||||||||||||||||||| |  ||||||||||||| |||||||||| |||||    
T  3024566 aaattttatggtacatccactatatttgagtgtactagtacattcactctttaaatttatagttaaatgagttg 3024493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 695 - 768
Target Start/End: Complemental strand, 36428311 - 36428238
Alignment:
Q  695 aaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    |||||||| |||||||| |||||||||||||||||  ||| |  ||||||||||| |||||||||||| |||||    
T  36428311 aaattctatggtacatccaatatatttgagtgtaccggtacatccactctttaaactaatagttaaatgagttg 36428238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 694 - 768
Target Start/End: Complemental strand, 480079 - 480005
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    |||||| || |||||||| | ||||||||||||||   ||| || |||||||||||||||||||||||| |||||    
T  480079 caaattttatggtacatccagtatatttgagtgtatcggtacactcactctttaaattaatagttaaatgagttg 480005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 694 - 768
Target Start/End: Complemental strand, 9910447 - 9910373
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| |||||| | | |||||||||||||||  ||| || ||||||||||||| |||||||||| |||||    
T  9910447 caaattctatggtacacccactatatttgagtgtaccggtacactcactctttaaattcatagttaaatgagttg 9910373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 694 - 768
Target Start/End: Complemental strand, 36339251 - 36339177
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| |||||| | |||||||||||||||||  ||| || || ||||||||||||| ||||||| |||||    
T  36339251 caaattctatggtacacccaatatatttgagtgtaccggtacactcattctttaaattaatggttaaatgagttg 36339177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 694 - 767
Target Start/End: Original strand, 33678157 - 33678230
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagtt 767  Q
    ||||||||| |||||| | | |||||||||||||||  ||| || ||||||||||||| |||||||||| ||||    
T  33678157 caaattctatggtacacccactatatttgagtgtaccggtacactcactctttaaattcatagttaaatgagtt 33678230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 695 - 767
Target Start/End: Original strand, 8258395 - 8258467
Alignment:
Q  695 aaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagtt 767  Q
    |||||||| |||||| | | |||||||||||||||  ||| || ||||||||||||| |||||||||| ||||    
T  8258395 aaattctatggtacacccactatatttgagtgtaccggtacacgcactctttaaattcatagttaaatgagtt 8258467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 694 - 762
Target Start/End: Complemental strand, 28318755 - 28318687
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaat 762  Q
    |||||| || |||||| | | |||||||||||||||| ||| || ||||||||||||| ||||||||||    
T  28318755 caaattttatggtacacccactatatttgagtgtactggtacactcactctttaaattcatagttaaat 28318687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 694 - 768
Target Start/End: Original strand, 27979015 - 27979089
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| | |||||| ||||||||||||||||   ||| ||  ||||||||||||||| ||||||| |||||    
T  27979015 caaattctatgatacatccaatatatttgagtgtatcggtacacttactctttaaattaatggttaaatgagttg 27979089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 689 - 767
Target Start/End: Complemental strand, 30753861 - 30753783
Alignment:
Q  689 ttagacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagtt 767  Q
    |||| |||||| || |||||||| |||||||||  ||| || | || || |||||||||||||||||||||||| ||||    
T  30753861 ttaggcaaattttatggtacatccaatatatttaggtgcaccaatacactcactctttaaattaatagttaaatgagtt 30753783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 739 - 768
Target Start/End: Original strand, 34259586 - 34259615
Alignment:
Q  739 cactctttaaattaatagttaaataagttg 768  Q
    ||||||||||||||||||||||||||||||    
T  34259586 cactctttaaattaatagttaaataagttg 34259615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 9e-20; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 688 - 806
Target Start/End: Complemental strand, 29454620 - 29454503
Alignment:
Q  688 attagacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaata 787  Q
    ||||| ||||||||| |||||| | |||||||||||||||||  ||| || |||||||||||||||||||||||||||||         |||||||||||    
T  29454620 attaggcaaattctatggtacacccaatatatttgagtgtaccggtacacccactctttaaattaatagttaaataagtt-atttttttgaagaaaaata 29454522  T
Q  788 ttatttttaatcatttata 806  Q
    |||||||| ||||||||||    
T  29454521 ttattttttatcatttata 29454503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 683 - 764
Target Start/End: Complemental strand, 4214911 - 4214830
Alignment:
Q  683 ttataattagacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataa 764  Q
    |||| ||||| ||||||||| |||||| | |||||||||||||||||  |||||| ||||||||||||||||||||||||||    
T  4214911 ttattattaggcaaattctatggtacacccaatatatttgagtgtaccggtatacccactctttaaattaatagttaaataa 4214830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 692 - 767
Target Start/End: Original strand, 1043058 - 1043133
Alignment:
Q  692 gacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagtt 767  Q
    ||||||||||| |||||| | ||||||||||||||||   ||| || |||||||||||||||||||||||||||||    
T  1043058 gacaaattctatggtacacccaatatatttgagtgtatcggtacacccactctttaaattaatagttaaataagtt 1043133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 694 - 806
Target Start/End: Complemental strand, 6631310 - 6631200
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattattt 793  Q
    ||||||||| |||||| | |||||||||||||||||  |||||| || ||||||||||||||||||||| |||||        ||||||||||||| |||    
T  6631310 caaattctatggtacacccaatatatttgagtgtaccggtatacccattctttaaattaatagttaaattagttg--ttttttgaagaaaaatatttttt 6631213  T
Q  794 ttaatcatttata 806  Q
    || ||||||||||    
T  6631212 tttatcatttata 6631200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 678 - 762
Target Start/End: Complemental strand, 44542234 - 44542150
Alignment:
Q  678 catgtttataattagacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaat 762  Q
    |||| |||||| ||| |||||| || |||||||  |||||||||||||||| |  ||||| ||||||||||||||||||||||||    
T  44542234 catgcttataaataggcaaattttatggtacattcaatatatttgagtgtattgatatactcactctttaaattaatagttaaat 44542150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 695 - 762
Target Start/End: Complemental strand, 29265999 - 29265932
Alignment:
Q  695 aaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaat 762  Q
    ||||| || |||||| | ||||||||||||||||  ||||||| ||||||||||||||||||||||||    
T  29265999 aaattatatggtacacccaatatatttgagtgtatcagtatacccactctttaaattaatagttaaat 29265932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 694 - 768
Target Start/End: Original strand, 2261031 - 2261105
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| ||||||   |||||||||||||||||  ||| || ||||||||||||||||| ||||||||||||    
T  2261031 caaattctatggtacactcaatatatttgagtgtaccggtacacccactctttaaattaataattaaataagttg 2261105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 692 - 807
Target Start/End: Original strand, 34633863 - 34633977
Alignment:
Q  692 gacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattat 791  Q
    ||||||||||| | |||| | ||||||||||||||||   ||| || |||||||||||||||||||||||| |||||        |||||||||||||||    
T  34633863 gacaaattctatgatacacccaatatatttgagtgtatcggtacactcactctttaaattaatagttaaatgagttg-tttttttgaagaaaaatattat 34633961  T
Q  792 ttttaatcatttatat 807  Q
    |||  |||||||||||    
T  34633962 tttctatcatttatat 34633977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 691 - 768
Target Start/End: Complemental strand, 26988795 - 26988718
Alignment:
Q  691 agacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| || |||||| | ||||||||||||||||   ||| || || |||||||||||||||||||||||||||    
T  26988795 agacaaattatatggtacacccaatatatttgagtgtatcggtacactcattctttaaattaatagttaaataagttg 26988718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 694 - 807
Target Start/End: Complemental strand, 2749711 - 2749601
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattattt 793  Q
    ||||||||| |||||| | |||||||||||||||||  ||| |  |||||||||||||||| ||||||| |||||        |||||||||||||||||    
T  2749711 caaattctatggtacacccaatatatttgagtgtacctgtacatccactctttaaattaatggttaaatgagttg---tttttgaagaaaaatattattt 2749615  T
Q  794 ttaatcatttatat 807  Q
    |  |||||||||||    
T  2749614 tctatcatttatat 2749601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 694 - 762
Target Start/End: Original strand, 36162192 - 36162260
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaat 762  Q
    |||||||||  ||||| | ||||||||||||||||| |||| |  ||||||||||||||||||||||||    
T  36162192 caaattctatagtacacccaatatatttgagtgtaccagtacatccactctttaaattaatagttaaat 36162260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 692 - 768
Target Start/End: Original strand, 40267477 - 40267553
Alignment:
Q  692 gacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||||| |||||| | | |||||||||||||||  ||| || ||||||||||||| |||||||||| |||||    
T  40267477 gacaaattctatggtacacccactatatttgagtgtaccggtacacccactctttaaattcatagttaaatgagttg 40267553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 695 - 767
Target Start/End: Original strand, 40578696 - 40578768
Alignment:
Q  695 aaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagtt 767  Q
    |||||||| |||||||| | ||||||| |||||| | |||||| ||||||||||||| |||||||||| ||||    
T  40578696 aaattctatggtacatccactatatttaagtgtattggtatactcactctttaaattcatagttaaatgagtt 40578768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 694 - 768
Target Start/End: Original strand, 117811 - 117885
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| |||||| | | |||||||||||||||  ||| || ||||||||||||| |||||||||| |||||    
T  117811 caaattctatggtacacccactatatttgagtgtaccggtacactcactctttaaattcatagttaaatgagttg 117885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 686 - 768
Target Start/End: Complemental strand, 26522379 - 26522297
Alignment:
Q  686 taattagacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||| |||||| || |||||| | | |||||||||||||||  ||| || ||||||||||||| |||||||||| |||||    
T  26522379 taattaggcaaattatatggtacacccactatatttgagtgtaccggtacactcactctttaaattcatagttaaatgagttg 26522297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 689 - 767
Target Start/End: Original strand, 36667230 - 36667308
Alignment:
Q  689 ttagacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagtt 767  Q
    |||| |||||| || |||||||| | |||||||||||||||  ||| || ||||||||||||| |||||||||| ||||    
T  36667230 ttaggcaaattatatggtacatccattatatttgagtgtaccggtacactcactctttaaattcatagttaaatgagtt 36667308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 694 - 768
Target Start/End: Complemental strand, 37676342 - 37676268
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| |||||| | | |||||||||||||||  ||| || ||||||||||||| |||||||||| |||||    
T  37676342 caaattctatggtacacccactatatttgagtgtaccggtacactcactctttaaattcatagttaaatgagttg 37676268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 694 - 768
Target Start/End: Complemental strand, 39300493 - 39300419
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| |||||| | ||||||||||| ||||||  || |  |||||||||||||||||||||||| |||||    
T  39300493 caaattctatggtacacccaatatatttgaatgtactgctacatccactctttaaattaatagttaaatgagttg 39300419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 695 - 806
Target Start/End: Complemental strand, 40777022 - 40776913
Alignment:
Q  695 aaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattatttt 794  Q
    |||||||| |||||| | || ||||||||||||| | ||| |  |||| |||||||||||||||||||||||||        || |||||||||||||||    
T  40777022 aaattctatggtacacccaaaatatttgagtgtattcgtacattcactttttaaattaatagttaaataagttg--ttttttgaggaaaaatattatttt 40776925  T
Q  795 taatcatttata 806  Q
    | ||||||||||    
T  40776924 ttatcatttata 40776913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 695 - 806
Target Start/End: Original strand, 41720250 - 41720360
Alignment:
Q  695 aaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattatttt 794  Q
    |||||||| |||||| | | ||||||||||||||   ||| || ||||||||||||| |||||||||| |||||        ||||||||||||||||||    
T  41720250 aaattctatggtacacccactatatttgagtgtatcggtacacccactctttaaattcatagttaaatgagttg-tttttttgaagaaaaatattatttt 41720348  T
Q  795 taatcatttata 806  Q
    | ||||||||||    
T  41720349 ttatcatttata 41720360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 695 - 768
Target Start/End: Original strand, 27847512 - 27847585
Alignment:
Q  695 aaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    |||||||| |||||| ||| |||||||||||||||   || || ||||||||||||| |||||||||| |||||    
T  27847512 aaattctatggtacacctactatatttgagtgtaccgatacactcactctttaaattcatagttaaatgagttg 27847585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 703 - 768
Target Start/End: Complemental strand, 38329845 - 38329780
Alignment:
Q  703 cggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| |||||||||||||||||  ||| |   ||||||||||||||||||||||| |||||    
T  38329845 cggtacatccaatatatttgagtgtaccggtacatttactctttaaattaatagttaaatgagttg 38329780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 689 - 767
Target Start/End: Complemental strand, 15726299 - 15726222
Alignment:
Q  689 ttagacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagtt 767  Q
    |||| ||||||||| |||||||| |||| ||||||||||| | ||| ||  | || |||||||||||||||||||||||    
T  15726299 ttaggcaaattctatggtacatccaata-atttgagtgtattggtacaccaaatccttaaattaatagttaaataagtt 15726222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 685 - 762
Target Start/End: Complemental strand, 42444631 - 42444555
Alignment:
Q  685 ataattagacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaat 762  Q
    |||||||| ||||||||| ||||||||||| | ||||||||||| | ||| ||  | || ||||||||||||||||||    
T  42444631 ataattaggcaaattctatggtacatctaa-agatttgagtgtattggtacaccaaatcattaaattaatagttaaat 42444555  T

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Target: scaffold0432 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 694 - 806
Target Start/End: Complemental strand, 3434 - 3324
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattattt 793  Q
    ||||||||| |||||| | ||||||||||||||||| |||| ||  ||||||||||||||||||||||||||||         |||||||||||||||||    
T  3434 caaattctatggtacacccaatatatttgagtgtaccagtacacctactctttaaattaatagttaaataagtt--attttttgaagaaaaatattattt 3337  T
Q  794 ttaatcatttata 806  Q
    || ||||||||||    
T  3336 tttatcatttata 3324  T

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Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 690 - 807
Target Start/End: Original strand, 38064656 - 38064771
Alignment:
Q  690 tagacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatatt 789  Q
    ||||||||||||| |||||||| |||||||||||||||||| ||| || |||||||| ||| ||| ||||||| |||||        |||||||||||||    
T  38064656 tagacaaattctatggtacatccaatatatttgagtgtacttgtacacccactctttgaatgaatggttaaatgagttg--atttttgaagaaaaatatt 38064753  T
Q  790 atttttaatcatttatat 807  Q
    |||||| |||||||||||    
T  38064754 attttttatcatttatat 38064771  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 694 - 806
Target Start/End: Original strand, 39620193 - 39620305
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattattt 793  Q
    |||||| || |||||| | ||||||||||||||||   ||| || ||||||||||||||||||||||||||||||        |||||||||||||||||    
T  39620193 caaattttatggtacacccaatatatttgagtgtatcggtacacccactctttaaattaatagttaaataagttgtttttttagaagaaaaatattattt 39620292  T
Q  794 ttaatcatttata 806  Q
    || ||||||||||    
T  39620293 tttatcatttata 39620305  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 694 - 806
Target Start/End: Complemental strand, 40947168 - 40947058
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattattt 793  Q
    ||||||||| ||| || | |||||||||||||||||  ||| || ||||||||||||||||||||||||||||||        |||||||||||||||||    
T  40947168 caaattctatggtgcacccaatatatttgagtgtaccggtacactcactctttaaattaatagttaaataagttg--ttttttgaagaaaaatattattt 40947071  T
Q  794 ttaatcatttata 806  Q
    || ||||||||||    
T  40947070 tttatcatttata 40947058  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 683 - 806
Target Start/End: Complemental strand, 35896828 - 35896707
Alignment:
Q  683 ttataattagacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaa 782  Q
    |||||||||| ||||||||| ||||||   |||||||||||||||||  ||| || ||| ||||||||||||||||||||||||||        || |||    
T  35896828 ttataattaggcaaattctatggtacactcaatatatttgagtgtaccggtacacccacactttaaattaatagttaaataagttg--ttttttgaggaa 35896731  T
Q  783 aaatattatttttaatcatttata 806  Q
    ||||||||||||| ||||||||||    
T  35896730 aaatattattttttatcatttata 35896707  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 694 - 806
Target Start/End: Original strand, 40495467 - 40495579
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattattt 793  Q
    |||||||||||| ||| | | |||||||||||||||  ||| ||  |||||||||||| |||||||||| |||||        |||||||||||||||||    
T  40495467 caaattctacggcacacccactatatttgagtgtaccggtacacttactctttaaattcatagttaaatgagttgttttttttgaagaaaaatattattt 40495566  T
Q  794 ttaatcatttata 806  Q
    || ||||||||||    
T  40495567 tttatcatttata 40495579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 694 - 807
Target Start/End: Original strand, 45157532 - 45157643
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttgnnnnnnnngaagaaaaatattattt 793  Q
    ||||||||| |||||| | |||||||||||||||||  ||| || |||||||||||||||| ||||||| |||||        |||||||||||||||||    
T  45157532 caaattctatggtacacccaatatatttgagtgtaccggtacacccactctttaaattaatggttaaatgagttg--ttttttgaagaaaaatattattt 45157629  T
Q  794 ttaatcatttatat 807  Q
    |  |||||||||||    
T  45157630 tctatcatttatat 45157643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 694 - 761
Target Start/End: Complemental strand, 42849732 - 42849665
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaa 761  Q
    ||||||||| |||||||| |||||||||||||||||   || || |||||||||||||||||||||||    
T  42849732 caaattctatggtacatccaatatatttgagtgtaccgatacacccactctttaaattaatagttaaa 42849665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 694 - 768
Target Start/End: Original strand, 6945342 - 6945416
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| |||||||| |||||||||||||||||  ||| || || | ||||||||||||||||||| |||||    
T  6945342 caaattctatggtacatccaatatatttgagtgtaccggtacacccattttttaaattaatagttaaatgagttg 6945416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 694 - 768
Target Start/End: Complemental strand, 17451689 - 17451615
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| |||||| ||  |||||||||||||||| ||| || ||||||||||||| |||||||||| |||||    
T  17451689 caaattctatggtacacctgctatatttgagtgtactggtacactcactctttaaattcatagttaaatgagttg 17451615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 690 - 768
Target Start/End: Original strand, 30980878 - 30980956
Alignment:
Q  690 tagacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||||||| |||||| | ||||||||| |||||| | ||| |  |||||||||||||||||||||||| |||||    
T  30980878 tagacaaattctatggtacacccaatatattttagtgtattggtacattcactctttaaattaatagttaaatgagttg 30980956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 686 - 768
Target Start/End: Complemental strand, 32602716 - 32602634
Alignment:
Q  686 taattagacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||| |||||| ||||||||||| | |||||||||||||||  ||| || ||||||||||||| ||| |||||| |||||    
T  32602716 taattaggcaaattatacggtacatccactatatttgagtgtaccggtacactcactctttaaattcataattaaatgagttg 32602634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 695 - 768
Target Start/End: Complemental strand, 18999123 - 18999050
Alignment:
Q  695 aaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    |||||||| |||||||| | |||||||||||||||  ||| || ||||||||||||| |||||||||| |||||    
T  18999123 aaattctatggtacatccactatatttgagtgtaccggtacactcactctttaaattcatagttaaatgagttg 18999050  T

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Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 695 - 767
Target Start/End: Original strand, 3260965 - 3261037
Alignment:
Q  695 aaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagtt 767  Q
    |||||||| |||||||| ||||||||||||| ||||  || || |||| ||||||||||||||||||| ||||    
T  3260965 aaattctatggtacatccaatatatttgagtttactgatacactcactttttaaattaatagttaaatgagtt 3261037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 694 - 768
Target Start/End: Complemental strand, 4049365 - 4049291
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| |||||||| | |||||||||||||||   || || ||||||||||||| |||||||||| |||||    
T  4049365 caaattctatggtacatccactatatttgagtgtaccgttacactcactctttaaattcatagttaaatgagttg 4049291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 694 - 768
Target Start/End: Original strand, 4740229 - 4740303
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    |||||| || |||||| | | |||||||||||||||  ||| || ||||||||||||| ||||||||||||||||    
T  4740229 caaattttatggtacacccactatatttgagtgtaccggtacactcactctttaaattcatagttaaataagttg 4740303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 694 - 768
Target Start/End: Original strand, 34091697 - 34091771
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    |||||| || |||||||  |||||||||||||||||   || || |||||||||||||||||||||||| |||||    
T  34091697 caaattatatggtacattcaatatatttgagtgtaccgatacacccactctttaaattaatagttaaatgagttg 34091771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 694 - 767
Target Start/End: Complemental strand, 1580646 - 1580573
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagtt 767  Q
    ||||||||| |||||| | |||||||||||||||||  ||| ||  |||||||||||||| |||||||| ||||    
T  1580646 caaattctatggtacacccaatatatttgagtgtaccggtacacttactctttaaattaacagttaaatgagtt 1580573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 692 - 768
Target Start/End: Complemental strand, 7673706 - 7673630
Alignment:
Q  692 gacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||||| |||||| | | | |||||||||||||  ||| || ||||||||||||| |||||||||| |||||    
T  7673706 gacaaattctatggtacacccactgtatttgagtgtaccggtacactcactctttaaattcatagttaaatgagttg 7673630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 694 - 768
Target Start/End: Original strand, 9589115 - 9589189
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    |||||| || |||||| | | |||||||||||||||  ||| || ||||||||||||| |||||||||| |||||    
T  9589115 caaattttatggtacacccactatatttgagtgtaccggtacactcactctttaaattcatagttaaatgagttg 9589189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 692 - 750
Target Start/End: Original strand, 27400725 - 27400783
Alignment:
Q  692 gacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaat 750  Q
    ||||||||||| | |||||| |||||||||||||||||| ||| || || |||||||||    
T  27400725 gacaaattctatgatacatccaatatatttgagtgtacttgtacactcattctttaaat 27400783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 691 - 768
Target Start/End: Complemental strand, 4298309 - 4298232
Alignment:
Q  691 agacaaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| || ||||||   |||||||||||||||||  ||| || || |||||||||||||||||| || |||||    
T  4298309 agacaaattttatggtacactcaatatatttgagtgtaccggtacacccattctttaaattaatagttacatgagttg 4298232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 767
Target Start/End: Original strand, 11227629 - 11227701
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagtt 767  Q
    ||||||||| |||||||| |||| ||||||||||| | ||| ||  | || |||||||||||||||||||||||    
T  11227629 caaattctatggtacatccaata-atttgagtgtattggtacaccaaatccttaaattaatagttaaataagtt 11227701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 694 - 768
Target Start/End: Original strand, 7212 - 7286
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaataagttg 768  Q
    ||||||||| |||||| | | |||||||||||||||  ||| || ||||||||||||| |||||||||| |||||    
T  7212 caaattctatggtacacccattatatttgagtgtaccggtacactcactctttaaattcatagttaaatgagttg 7286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 694 - 762
Target Start/End: Complemental strand, 16987 - 16919
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaat 762  Q
    ||||||||| |||||| | ||||||||||||||||   ||| || |||||||||||||||| |||||||    
T  16987 caaattctatggtacacccaatatatttgagtgtatcggtacactcactctttaaattaatggttaaat 16919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 694 - 762
Target Start/End: Original strand, 55857 - 55925
Alignment:
Q  694 caaattctacggtacatctaatatatttgagtgtactagtatacacactctttaaattaatagttaaat 762  Q
    ||||||||| |||||| | ||||||||||||||||   ||| || |||||||||||||||| |||||||    
T  55857 caaattctatggtacacccaatatatttgagtgtatcggtacactcactctttaaattaatggttaaat 55925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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