View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14678_low_10 (Length: 372)
Name: NF14678_low_10
Description: NF14678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14678_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 49 - 360
Target Start/End: Complemental strand, 5400820 - 5400509
Alignment:
| Q |
49 |
atctgtgatctctaaattattataaaatctcatggcaaacaatcattttggtttgatgttagacgatgtcattatagtctctaagtatatcaaaattgca |
148 |
Q |
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| T |
5400820 |
atctgtgatctctaaattattataaaatctcatggcaaacaatcattttggtttgatgttagacgatgtcattatagtctctaagtatatcaaaattgca |
5400721 |
T |
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| Q |
149 |
cataccttcggtttatatcttgtttgtaatttatagtttaaattgacttacgaaaaacacattttatgactaaattgacttgtaagaagagcaaaatgac |
248 |
Q |
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| T |
5400720 |
cataccttaagtttatatcttgtttgtaatttatagtttaaattgacttacgaaaaacatattttatgactaaattgacttgtaagaagagcaaaatgac |
5400621 |
T |
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| Q |
249 |
taactaaaaagacacttgagaatatgttaacaattttgatatataaggacaatccttcacacatttagatatcaaaattgtttttacccaaaatcctatc |
348 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5400620 |
taactaaaaggacacttgagaatatgttaacaattttgatatataacgacaatccttcacacatttagatatcaaaattgtttttacccaaaatcctatc |
5400521 |
T |
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| Q |
349 |
ctagtattattt |
360 |
Q |
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| T |
5400520 |
ctagtattattt |
5400509 |
T |
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