View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14678_low_11 (Length: 359)
Name: NF14678_low_11
Description: NF14678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14678_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 34813187 - 34813329
Alignment:
| Q |
11 |
gagcacagacagttaattactaatgcgttgcctcatgttccatgctactaaacattcccctactagttctcatactatattttttaacaaggggcaattt |
110 |
Q |
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| T |
34813187 |
gagcacaaaaagttaattactaatgtgttgcctcatgttccatgctactaaacattcccct-ctagttctcatactatattttttaacaaggggcaattt |
34813285 |
T |
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| Q |
111 |
ttctgtctttattaagttcctaatcatattgacaatacatatat |
154 |
Q |
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| T |
34813286 |
ttctgtctttattaagttcctaatcatattgacaatacatatat |
34813329 |
T |
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Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 154 - 346
Target Start/End: Original strand, 34815285 - 34815477
Alignment:
| Q |
154 |
tagttacctataaattgatcagtcataatttgaatattcaaaaagatgttcaccatataacctaaagtacnnnnnnngttctgaggaattaaatcccagt |
253 |
Q |
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| T |
34815285 |
tagttacctataaattgatcagtcataatttgaatattcaaaaagatgttcaccatataacctaaagtactttttttgttctgaggaattaaatcccagt |
34815384 |
T |
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| Q |
254 |
cccataaagaatatattcattgcatcacannnnnnnnnggnnnnnnngctttttcttttcatttgcatagtcaaacctgcatgatgtagtata |
346 |
Q |
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| T |
34815385 |
cccataaagaagatattcattgcatcacatttttttttggaaaaaaagctttttcttttcatttgcatagtcaaacctgcatgatgtagtata |
34815477 |
T |
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