View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14678_low_13 (Length: 285)

Name: NF14678_low_13

Description: NF14678

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF14678_low_13

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 242; E-Value: 1e-134

Query Start/End: Original strand, 1 - 271

Target Start/End: Original strand, 53578539 - 53578809

Alignment:

Q	1	ataacgcaacaaagtgggcaagacctcatggtgtcaagggattttcaggtccaatccaatccataattccacgtgaagctagaagaaagtccaaagatat	100	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	53578539	ataacgcaacaaagtgggcaagacctcacggtgtcaagggattttcaggtccaatccaatccataattccacgtgaagctagaagaaagtccaaagatat	53578638	T

Q	101	taatggaattgattatgaagaacccacttcaccaaaaatatcgtgcatgggacaaatcaagcacaagaagaaacaaatnnnnnnnttgaaagacatggaa	200	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	53578639	taatggaattgattatgaagaacccacttcaccaaaaatatcgtgcatgggacaaatcaagcacaagaagaaacaaataaaaaaatcgaaagacatggaa	53578738	T

Q	201	gtgaagaaacatgtaaacacttttcaaaagatgttgtttcatgttgggaaaccaaaatctgaaggaagaag	271	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	53578739	gtgaagaaacatgtaaacacttttcaaaagatgttgtttcatgttgggaaaccaaaatctgaaggaagaag	53578809	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2

Raw Score: 36; E-Value: 0.00000000003

Query Start/End: Original strand, 120 - 171

Target Start/End: Original strand, 15524884 - 15524935

Alignment:

Q	120	gaacccacttcaccaaaaatatcgtgcatgggacaaatcaagcacaagaaga	171	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	15524884	gaacccacttcaccaaaaatatcgtgcatgggagagatcaagcttaagaaga	15524935	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]