View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14678_low_15 (Length: 265)
Name: NF14678_low_15
Description: NF14678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14678_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 35 - 247
Target Start/End: Original strand, 25884620 - 25884832
Alignment:
| Q |
35 |
cacagaagccaataatgaagacttccctgaaccaacagttcctacaacagcagcatgatcccctttcttaattaccaactcttcaactctcagagcgtcg |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25884620 |
cacagaagccaataatgaagacttccctgaaccaacagttcctacaacagcagcatgatcccctttcttaattaccaactcttcaactctcagagcgtcg |
25884719 |
T |
|
| Q |
135 |
ttctcatcgttatcatcccatgagaatttcccatcttttatctccacagctacatcaccatcacaattctcctctcgttgcactgcattctcatccattt |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25884720 |
ttctcatcgttatcatcccatgagaatttcccatcttttatctccacagctacatcaccatcacaattctcctctcgttgcactgcattctcatccattt |
25884819 |
T |
|
| Q |
235 |
ccttactcgtcat |
247 |
Q |
| |
|
||||||||||||| |
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|
| T |
25884820 |
ccttactcgtcat |
25884832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 35 - 242
Target Start/End: Original strand, 14319938 - 14320145
Alignment:
| Q |
35 |
cacagaagccaataatgaagacttccctgaaccaacagttcctacaacagcagcatgatcccctttcttaattaccaactcttcaactctcagagcgtcg |
134 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||| ||| ||| || || |
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| T |
14319938 |
cacagaagccaataatgaagacttgcctgaaccaacagttcctacaatagcagcacggtcccctttcttaattaccaactcttccactgtcaacgcctca |
14320037 |
T |
|
| Q |
135 |
ttctcatcgttatcatcccatgagaatttcccatcttttatctccacagctacatcaccatcacaattctcctctcgttgcactgcattctcatccattt |
234 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
14320038 |
ttctcatccttatcatcccatgaaaatttcccatcttttatctccacggctacatcaccatcacaattctcctctctttgcactgcattctcatccattt |
14320137 |
T |
|
| Q |
235 |
ccttactc |
242 |
Q |
| |
|
|||||||| |
|
|
| T |
14320138 |
ccttactc |
14320145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 35 - 247
Target Start/End: Original strand, 14303547 - 14303759
Alignment:
| Q |
35 |
cacagaagccaataatgaagacttccctgaaccaacagttcctacaacagcagcatgatcccctttcttaattaccaactcttcaactctcagagcgtcg |
134 |
Q |
| |
|
||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||||| || | ||||| || ||| || |
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|
| T |
14303547 |
cacagaagccagtaatgaagacttgcctgatccaacagttcctacaacagcagcatggtcccctttcttaatcaccaattccttaactcgcaaagcctca |
14303646 |
T |
|
| Q |
135 |
ttctcatcgttatcatcccatgagaatttcccatcttttatctccacagctacatcaccatcacaattctcctctcgttgcactgcattctcatccattt |
234 |
Q |
| |
|
|||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||| |
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|
| T |
14303647 |
ttctcatccatatcatcccaagaaaatttcccatcttttatctccacagctacatcaccattacagttctcctctctttgcactgcattctcatccattt |
14303746 |
T |
|
| Q |
235 |
ccttactcgtcat |
247 |
Q |
| |
|
|||||||| |||| |
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|
| T |
14303747 |
ccttactcatcat |
14303759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 35 - 247
Target Start/End: Original strand, 14281789 - 14282001
Alignment:
| Q |
35 |
cacagaagccaataatgaagacttccctgaaccaacagttcctacaacagcagcatgatcccctttcttaattaccaactcttcaactctcagagcgtcg |
134 |
Q |
| |
|
|||||||||||||||||||||||| || || ||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||| ||| || || |
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|
| T |
14281789 |
cacagaagccaataatgaagacttgcccgatccaactgttcctacaatagcagcatggtcccctttcttaattaccaactcttcaactgtcaacgcctca |
14281888 |
T |
|
| Q |
135 |
ttctcatcgttatcatcccatgagaatttcccatcttttatctccacagctacatcaccatcacaattctcctctcgttgcactgcattctcatccattt |
234 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||| |||| |||| |||||| ||| | |||||||||| |
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|
| T |
14281889 |
ttctcatcgttatcatcccaagaaaatttcccatcttttatctccacagctacatcaccaccacaactctcatctctttgcacagcactatcatccattt |
14281988 |
T |
|
| Q |
235 |
ccttactcgtcat |
247 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
14281989 |
ccttactcatcat |
14282001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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