View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14678_low_16 (Length: 260)
Name: NF14678_low_16
Description: NF14678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14678_low_16 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 33952553 - 33952305
Alignment:
| Q |
1 |
catgatgcctaatttgttgatgatttccattgcttgtattccgttgtcatctagtctatacagctctgcccacatatcaacgagagcagcgacaggaatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33952553 |
catgatgcctaatttgttgatgatttccattgcttgtattccgttgtcatctagtctatacagctctgcccacatatcaacgagagcagcgacaggaatt |
33952454 |
T |
|
| Q |
101 |
ctatggtcttcgggaaataaggctatgtccatgaagcactccatgattgtgggattatcttctaaaacatcgaagatcttttggaggcgagtaagtaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33952453 |
ctatggtcttcgggaaataaggctatgtccatgaagcactccatgattgtgggattatcttctaaaacatcgaagatcttttggaggcgagtaagtaaat |
33952354 |
T |
|
| Q |
201 |
cagtattagaatcaagaatagaatgaccttgtgatagttctttccctat |
249 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33952353 |
cagtattagaatcaagaatagaatgaccttgtgatagttctttccctat |
33952305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 33959853 - 33959605
Alignment:
| Q |
1 |
catgatgcctaatttgttgatgatttccattgcttgtattccgttgtcatctagtctatacagctctgcccacatatcaacgagagcagcgacaggaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33959853 |
catgatgcctaatttgttgatgatttccattgcttgtattccgttgtcatctagtctatacagctctgcccacatatcaacgagagcagcgacaggaatt |
33959754 |
T |
|
| Q |
101 |
ctatggtcttcgggaaataaggctatgtccatgaagcactccatgattgtgggattatcttctaaaacatcgaagatcttttggaggcgagtaagtaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||| ||||||| | |
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| T |
33959753 |
ctatggtcttcgggaaataaggctatgtccatgaagcactccatgattgtaggattatcttccaaaacatcaaagatcttttggaggcgaataagtaatt |
33959654 |
T |
|
| Q |
201 |
cagtattagaatcaagaatagaatgaccttgtgatagttctttccctat |
249 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
33959653 |
tggtattagaatcaagaagagaatgaccttgtgctagttctttccctat |
33959605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 33975153 - 33974905
Alignment:
| Q |
1 |
catgatgcctaatttgttgatgatttccattgcttgtattccgttgtcatctagtctatacagctctgcccacatatcaacgagagcagcgacaggaatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33975153 |
catgatgcctaatttgttgatgatttccattgcttgtattccgttgtcatctagtttatacagctctgcccacatatcaacgagagcagcgacaggaatt |
33975054 |
T |
|
| Q |
101 |
ctatggtcttcgggaaataaggctatgtccatgaagcactccatgattgtgggattatcttctaaaacatcgaagatcttttggaggcgagtaagtaaat |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
33975053 |
ctatggtcttcgggaaataaggctaggtccatgaagcactccatgatttttggattatcttccaaaacatcgaagatcttttggaggcgagtaagtaatt |
33974954 |
T |
|
| Q |
201 |
cagtattagaatcaagaatagaatgaccttgtgatagttctttccctat |
249 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||||| ||| |||| |
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| T |
33974953 |
cggtattagaatcaagaattgaatgaccttgtgatagttccttcactat |
33974905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 33992073 - 33991840
Alignment:
| Q |
1 |
catgatgcctaatttgttgatgatttccattgcttgtattccgttgtcatctagtctatacagctctgcccacatatcaacgagagcagcgacaggaatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33992073 |
catgatgcctaatttgttgatgatttccattgcttgtattccgttgtcatctagtttatacagctttgcccacatatcaacgagagcagcgacaggaatt |
33991974 |
T |
|
| Q |
101 |
ctatggtcttcgggaaataaggctatgtccatgaagcactccatgattgtgggattatcttctaaaacatcgaagatcttttggaggcgagtaagtaaat |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| | |
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|
| T |
33991973 |
ctatggtcttcaggaaataaggctatgtccatgaagcactccatgattgtaggattatcttccaaaacatcaaagatcttttggaggcgagtaagtaatt |
33991874 |
T |
|
| Q |
201 |
cagtattagaatcaagaatagaatgaccttgtga |
234 |
Q |
| |
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| |||||||||||||||||||||||||||||||| |
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| T |
33991873 |
cggtattagaatcaagaatagaatgaccttgtga |
33991840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 33941951 - 33941720
Alignment:
| Q |
9 |
ctaatttgttgatgatttccattgcttgtattccgttgtcatctagtctatacagctctgcccacatatcaacgagagcagcgacaggaattctatggtc |
108 |
Q |
| |
|
||||||||||||| || |||||||||| | | |||| |||||||||| ||||| ||||||||||||||||| | ||||| ||||||||||| || || |
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|
| T |
33941951 |
ctaatttgttgattatgtccattgcttctttgccgtcatcatctagtccatacaactctgcccacatatcaatcaaggcagcaacaggaattctctgatc |
33941852 |
T |
|
| Q |
109 |
ttcgggaaataaggctatgtccatgaagcactccatgattgtgggattatcttctaaaacatcgaagatcttttggaggcgagtaagtaaatcagtatta |
208 |
Q |
| |
|
||| |||||||| || | ||||||||||||||| || | ||| ||||||||| |||||||| || ||||||||||||||| ||||||| ||||||||| |
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| T |
33941851 |
ttcaggaaataatgcaaggtccatgaagcactctttgctaatggcattatcttccaaaacatccaaaatcttttggaggcgaataagtaattcagtatta |
33941752 |
T |
|
| Q |
209 |
gaatcaagaatagaatgaccttgtgatagttc |
240 |
Q |
| |
|
|||||||| |||||| ||||| |||| ||||| |
|
|
| T |
33941751 |
gaatcaagtatagaacgacctcgtgaaagttc |
33941720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 33913212 - 33912981
Alignment:
| Q |
9 |
ctaatttgttgatgatttccattgcttgtattccgttgtcatctagtctatacagctctgcccacatatcaacgagagcagcgacaggaattctatggtc |
108 |
Q |
| |
|
|||||||||||||||| ||||||||| ||| || | ||||||||| |||||| ||| ||||||||||||| |||||||| || |||||||| |||| |
|
|
| T |
33913212 |
ctaatttgttgatgatggccattgcttctatgccttcatcatctagtttatacaactccgcccacatatcaatgagagcagaaacgggaattctcaggtc |
33913113 |
T |
|
| Q |
109 |
ttcgggaaataaggctatgtccatgaagcactccatgattgtgggattatcttctaaaacatcgaagatcttttggaggcgagtaagtaaatcagtatta |
208 |
Q |
| |
|
||| || ||||| || | |||||||||||||||| || | | | ||||||||| |||||||| |||| |||| |||||||||||||||| |||||| || |
|
|
| T |
33913112 |
ttcagggaataatgcaaggtccatgaagcactccttgttaatagcattatcttccaaaacatccaagacctttcggaggcgagtaagtaattcagtacta |
33913013 |
T |
|
| Q |
209 |
gaatcaagaatagaatgaccttgtgatagttc |
240 |
Q |
| |
|
|||||||| |||||| ||||||| || ||||| |
|
|
| T |
33913012 |
gaatcaagtatagaacgaccttgagaaagttc |
33912981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 7 - 249
Target Start/End: Complemental strand, 12138 - 11896
Alignment:
| Q |
7 |
gcctaatttgttgatgatttccattgcttgtattccgttgtcatctagtctatacagctctgcccacatatcaacgagagcagcgacaggaattctatgg |
106 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||| |||||||||||| ||||| || |||||||||| || |||||||| ||||||||||||||| |
|
|
| T |
12138 |
gcctaatttgtttatgatttccattgcttctattccattgtcatctagttcatacaattcagcccacatattaattagagcagcaacaggaattctatgg |
12039 |
T |
|
| Q |
107 |
tcttcgggaaataaggctatgtccatgaagcactccatgattgtgggattatcttctaaaacatcgaagatcttttggaggcgagtaagtaaatcagtat |
206 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||| || |||||||||| |||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
12038 |
tcttcgggaaataaggctaggtccatgaagcactccttgattatgagattatcttcgaaaacatcaaagatcttttggaggcgagtaagtaactcagtat |
11939 |
T |
|
| Q |
207 |
tagaatcaagaatagaatgaccttgtgatagttctttccctat |
249 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||| ||| |||| |
|
|
| T |
11938 |
tagaatcaagtatagaatgaccttgtgacagttccttcactat |
11896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 8278202 - 8278439
Alignment:
| Q |
1 |
catgatgcctaatttgttgatgatttccattgcttgtattccgttgtcatctagtctatacagctctgcccacatatcaacgagagcagcgacaggaatt |
100 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||| |
|
|
| T |
8278202 |
catgaggcctaatttattgatgatttccattgcttctattccgttgtcatctagtctattcagctctgcc--------aacgagagcagcgacatgaatt |
8278293 |
T |
|
| Q |
101 |
ctatggtcttcgggaaataaggctatgtccatgaagcactccatg-------attgtgggattatcttctaaaacatcgaagatcttttggaggcgagta |
193 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8278294 |
ctatgggcttcaggaaataaggctatgtccatgaagcacttcatgaatcatgattgtgggattatcttctaaaacatcgaatatcttttggaggcgagta |
8278393 |
T |
|
| Q |
194 |
agtaaatcagtattagaatcaagaatagaatgaccttgtgatagttc |
240 |
Q |
| |
|
||||| || |||||||||||||||| |||| ||||| |||| ||||| |
|
|
| T |
8278394 |
agtaattcggtattagaatcaagaacagaa-gacctcgtgacagttc |
8278439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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