View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14678_low_17 (Length: 238)
Name: NF14678_low_17
Description: NF14678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14678_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 42216051 - 42215830
Alignment:
| Q |
1 |
cacactatcaatggcgggtgactcgaagaagcgatggatggtaacctacaccaaacacgtcaaacagaaacgcaaagtctaccaagacggattcctagtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42216051 |
cacactatcaatggcgggtgactcgaagaagcgatggatggtaacctacaccaaacacgtcaaacagaaacgcaaagtctaccaagacggattcctagtt |
42215952 |
T |
|
| Q |
101 |
ctcaacgtttccactcgcaaggttcattttctctctatctacccctttcacacttttcaattttctaaatcaaccgtttattcgtatccgaaatcaaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42215951 |
ctcaacgtttccactcgcaaggttcattttctctctatctacccctttcacactcttcaattttctaaatcaaccgtttattcgtatccgaaatcaaaat |
42215852 |
T |
|
| Q |
201 |
cgatattactcaatttcaaaag |
222 |
Q |
| |
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|||||||||||||||||||||| |
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|
| T |
42215851 |
cgatattactcaatttcaaaag |
42215830 |
T |
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