View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14678_low_2 (Length: 523)
Name: NF14678_low_2
Description: NF14678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14678_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 19 - 520
Target Start/End: Original strand, 41739645 - 41740128
Alignment:
| Q |
19 |
tgagcgatgaagtatgaccaatgttcaatagagaaccatctccaatttttcatatatagcctctctccatcaaaatttgagaagaacgaatgttacgcca |
118 |
Q |
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| T |
41739645 |
tgagcgatgaagtatgaccaatgttcactagagaaccatctccaatttttcatatatagcctctctccatcaaaatttgagaagaacgaatgttacgcca |
41739744 |
T |
|
| Q |
119 |
cacataactaaagtagaaaatgcaggaaattaaaagaagagaatgagaagagagtttgacaatttgtagatataaacgaggattgattcctctaaagtga |
218 |
Q |
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| T |
41739745 |
cacataactaaagtagaaaatgcaggaaattaaaagaagagaatgagaagagagtttgacaatttgtagatataaacgaggattgattcctctaaagtga |
41739844 |
T |
|
| Q |
219 |
gtaattagtattagtaaagtgagaaatcaatggttgatgcacatattaatttgcttatcacggttaatattcctcaatttactctctaaaatgaattgtt |
318 |
Q |
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| T |
41739845 |
gtaattagtattagtgaagtgagaaatcaatggttgatgcacatattaatttgcttatcacggttaatattcctcaatttcctctctaaaatgaattgtt |
41739944 |
T |
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| Q |
319 |
cactttagaagcgcttgtccatatatacgcgcttgtccatatatacgaggtcagttttggagacctaatacacgaaagatagagcaaaattaatcactat |
418 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41739945 |
cactttagaagcgcttgtcc------------------atatatacgaggtcagttttggagacctaatacacgaaagatagagcaaaattaatcactat |
41740026 |
T |
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| Q |
419 |
tcactacgaggagggaagaacaaaatcaagttgatacatagagtttacatgaatatgtctcagacctaaaagcacctacctacatagagataccctatgc |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
41740027 |
tcactacgaggagggaagaacaaaatcaagttgatacatagagtttacatgaatatgtctcacacctaaaagcacctacctgcatagagataccctatgc |
41740126 |
T |
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