View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14678_low_4 (Length: 444)
Name: NF14678_low_4
Description: NF14678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14678_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 27267970 - 27268408
Alignment:
| Q |
1 |
catgagcgtgatttaaaaccttggctaaaatttgttcatttgatggtttattaggacaacggattggtcccaattgtggaaccagagatcttgcttgatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27267970 |
catgagcgtgatttaaaaccttggctaaaatttgttcatttgatggtttattaggacaacggattggtcccaattgtggaaccagagatcttgcttgatg |
27268069 |
T |
|
| Q |
101 |
gagaacatagtattgacagaacttttgaagtagcacaaaaggtttgggctgaggttttcttctaccttgctgagaacaatgtccaatttgagggcattct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27268070 |
gagaacatagtattgacagaacttttgaagtagcacaaaaggtttgggctgaggttttcttctaccttgctgagaacaatgtccaatttgagggcattct |
27268169 |
T |
|
| Q |
201 |
cctcaagcctagcatggttaccccaggagctgagtccaaggacaaggtctcttctgcaacagttgctgactataccctcaagctccttcacaggagaatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27268170 |
cctcaagcctagcatggttaccccaggagctgagtccaaggacaaggtctcttctgcaacagttgctgactatatcctcaagctccttcacaggagaatc |
27268269 |
T |
|
| Q |
301 |
cccccagccgtccctgatatcatggtatgtgaaactaaccaaatacaattttctttgtattccaaacttttatctttgttcatacaatatgaagcaacga |
400 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27268270 |
cccccagccgtccctggtatcatggtatgtgaaactaaccaaatacaattttctttgtattccaaacttttatctttgttcatacaatatgaagcaacga |
27268369 |
T |
|
| Q |
401 |
cacaggtacagacaacaggcacgatactaacacgttcat |
439 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||| |
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| T |
27268370 |
cacaggtacagacaccaggcacgatactaacacgttcat |
27268408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 27251184 - 27251530
Alignment:
| Q |
1 |
catgagcgtgatttaaaaccttggctaaaatttgttcatttgatggtttattaggacaacggattggtcccaattgtggaaccagagatcttgcttgatg |
100 |
Q |
| |
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|||||| |||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27251184 |
catgagtgtgatttaaaaccttggctaaaatatgtccatttaatggtttattaggacaacggattggtcccaattgtggaaccagagatcttgctggatg |
27251283 |
T |
|
| Q |
101 |
gagaacatagtattgacagaacttttgaagtagcacaaaaggtttgggctgaggttttcttctaccttgctgagaacaatgtccaatttgagggcattct |
200 |
Q |
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|||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27251284 |
gagaacatggtattgatagaacttatgaagtagcacaaaaggtttgggctgaggttttcttctaccttgctgagaacaatgtccaatttgagggtattct |
27251383 |
T |
|
| Q |
201 |
cctcaagcctagcatggttaccccaggagctgagtccaaggacaaggtctcttctgcaacagttgctgactataccctcaagctccttcacaggagaatc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27251384 |
cctcaagcctagcatggttaccccaggagctgagtccaaggacaaggcctctcctgcaacagttgctgactataccctcaagctccttcacaggagaatt |
27251483 |
T |
|
| Q |
301 |
cccccagccgtccctgatatcatggtatgtgaaactaaccaaataca |
347 |
Q |
| |
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||||| || ||||||| ||||||||||||||| |||||||||||||| |
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|
| T |
27251484 |
ccccctgctgtccctggtatcatggtatgtgacactaaccaaataca |
27251530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 11 - 347
Target Start/End: Original strand, 21195445 - 21195781
Alignment:
| Q |
11 |
atttaaaaccttggctaaaatttgttcatttgatggtttattaggacaacggattggtcccaattgtggaaccagagatcttgcttgatggagaacatag |
110 |
Q |
| |
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||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
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| T |
21195445 |
atttaaaaccttggctaaaatatgtccatttaatggtttattaggacaacggattggtcccaattgtggaaccagagatcttgctggatggagaacatgg |
21195544 |
T |
|
| Q |
111 |
tattgacagaacttttgaagtagcacaaaaggtttgggctgaggttttcttctaccttgctgagaacaatgtccaatttgagggcattctcctcaagcct |
210 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
21195545 |
tattgacagaacttatgaagtagcacaaaaggtttgggctgaggttttcttctaccttgctgagaacaatgtccaatttgagggtattctcctcaagcct |
21195644 |
T |
|
| Q |
211 |
agcatggttaccccaggagctgagtccaaggacaaggtctcttctgcaacagttgctgactataccctcaagctccttcacaggagaatccccccagccg |
310 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| || | |
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| T |
21195645 |
agcatggttaccccaggagctgagtccaaggacaaggcctctcctgcaacagttgctgactataccctcaagctccttcacaggagaattccccctgctg |
21195744 |
T |
|
| Q |
311 |
tccctgatatcatggtatgtgaaactaaccaaataca |
347 |
Q |
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|||||| ||||||||||||||| |||||||||||||| |
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| T |
21195745 |
tccctggtatcatggtatgtgacactaaccaaataca |
21195781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 49364732 - 49364671
Alignment:
| Q |
173 |
agaacaatgtccaatttgagggcattctcctcaagcctagcatggttaccccaggagctgag |
234 |
Q |
| |
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|||||||||||| |||||||| ||| | |||||||||||||||||||| || || |||||| |
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| T |
49364732 |
agaacaatgtcctttttgagggaattttgctcaagcctagcatggttacacctggtgctgag |
49364671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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