View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14678_low_7 (Length: 401)
Name: NF14678_low_7
Description: NF14678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14678_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 23553847 - 23553465
Alignment:
| Q |
1 |
acttaacgaacaaaacctacataaaactcacagttcagagaaaaggacatgaacaacttcgagcttgtggcgcttggagttacaaattggcatatgaaac |
100 |
Q |
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| T |
23553847 |
acttaatgaacaaaacctacataaaactcacagttcagagaa--ggacatgaacaacttcgagcttgtggcgcttggagttacaaattggcatatgaaac |
23553750 |
T |
|
| Q |
101 |
cacaaattagtatgcgtcgtgtgtgtttacaactccgattaaagtcaagatcagcgtgcagcgtgtgcgatggttaagatttcagagtttgtcgtggttg |
200 |
Q |
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| T |
23553749 |
cacaaattagaatgcgtcgtgtgtgtttacaacaccgatttaagtcaagatcagcgtgcagcgtgtgcgatggttaagatttcagagtttgtcgtggttg |
23553650 |
T |
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| Q |
201 |
aaatctccgtgtgccgtggttaaaatccatgtgtgtgacagttcacaccgttgtttgagctaagcgttcaaatcggtcgatggccatgccatttgaaaga |
300 |
Q |
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| T |
23553649 |
aaatctccgtgtgcggtggttaaaatccatgtgtgtgacagttcacaccgttgtttgagctaagcgttcaaatcggccgatggccatgccatttgaaaaa |
23553550 |
T |
|
| Q |
301 |
tcattttagtttgaagagttatgcatcgtcggcaaaggttgattgtaagcgaatgacattatctatgtagcagaagctatataac |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23553549 |
gcattttagtttgaagagttatgcatcgtcggcaaaggttgattgtaagcgaatgacattatctatgtagcagaagctatataac |
23553465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 235
Target Start/End: Complemental strand, 23306321 - 23306235
Alignment:
| Q |
150 |
atcagcgtgcagcgtgtgcgatggttaagatttcagag--tttgtcgtggttgaaatctccgtgtgccgtggttaaaatccatgtgtg |
235 |
Q |
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| T |
23306321 |
atcagtgtgcagcgtgttcgatggctaagatttcagagtatgtgtggtggttgaaattgacgtgtg-ggtggttaaaattcatgtgtg |
23306235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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